| Protein: | gi|16198253, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 320 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16198253, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
339.0 | [0..4] | [320..1] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MIKMETPSEF TEKQPPTHDH QPRLNEVAQK FLADLDEERQ RLSADFPLCA LLIDEAVDRV 60
61 YCTGRIPGKE F
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.666 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.481 | a.118.1 | ARM repeat |
| View | Download | 0.460 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.415 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.414 | f.17.1 | F1F0 ATP synthase subunit C |
|
Region A: Residues: [72-212] |
1 11 21 31 41 51
| | | | | |
1 YADVYKQKPM KITQKVFVPV KQYPKFNFTG KILGPKGNSL RRLQEETQCK IAIKGRSSIR 60
61 DRNKEEQLRS TGDPRYAHLQ KDLFLEVSTV ATPAECYARI AYALAEIRKY LIPDKNDEVS 120
121 HEQLRELMEM DPESAKNIHG P
|
| Detection Method: | |
| Confidence: | 45.522879 |
| Match: | 2bl5A |
| Description: | Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 4.04366657586229 | bayes_pls_golite062009 |
| nucleic acid binding | 2.9975833546175 | bayes_pls_golite062009 |
| protein binding | 2.23982167381721 | bayes_pls_golite062009 |
| RNA binding | 1.92480731732573 | bayes_pls_golite062009 |
| mRNA binding | 0.492861030614662 | bayes_pls_golite062009 |
| transcription regulator activity | 0.441650663459137 | bayes_pls_golite062009 |
| DNA binding | 0.355450873947182 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
|
Region A: Residues: [213-320] |
1 11 21 31 41 51
| | | | | |
1 NLEAYRSVFD KKFGGNSNGA PKYINLIKRA AENPPEVDDV EEVAYEYEHR MPPKRPPTGY 60
61 EYSKPRPSII PTNAAAYKRP YPTDMKRMRE PPIKSYKPNP YTILKKYK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
