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View Structure Prediction Details

Protein: CG3045-PA
Organism: Drosophila melanogaster
Length: 499 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3045-PA.

Description E-value Query
Range
Subject
Range
gi|125811944|ref... - GA15853-PA [Drosophila pseudoobscura], GA15853 [Drosophila pseudoobscura pseudoobscura]
gi|54637235, gi|... - gi|54637235|gb|EAL26638.1| GA15853 [Drosophila pseudoobscura pseudoobscura], gi|125811944|ref|XP_001...
446.0 [0..1] [496..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATNDKKVV INKRLKGLSR EALEKLTQTE LIDKVIQLEA YNFQLRNLLQ KKLSEKDKHD  60
   61 KEYSGLIGNE AEGKVSQVAK TSSKVQKIRK FDWSSAH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRHVLLKITY FGWDYQGFAC QEDSNDTIES NLFRALARTC LIESRATSNY HRCGRTDKEV  60
   61 SAFCQVISID LRSKHPPESQ LDPTALSSEI DYCGLLNRVL PKNIQCVAWM PLRSPVYSAR 120
  121 FDCVSRTYRY YFPKGDLDIA AMRKACDLLV RHADFRNFCK MDVHNGVTNY MRNLQSARVE 180
  181 ACDQTNHTNS GYDMYYLEIQ ANAFLWHQIR CIMAVLLLVG QKKENPGVIS DLLDVESNPC 240
  241 KPQYTPAIGL PLNLFRCDFR DHTTRSVN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.522879
Match: 2nqpA
Description: No description for 2nqpA was found.

Predicted functions:

Term Confidence Notes
pseudouridine synthase activity 5.60483019625575 bayes_pls_golite062009
intramolecular transferase activity 4.62815459483632 bayes_pls_golite062009
isomerase activity 3.43067391737824 bayes_pls_golite062009
catalytic activity 2.39224964671205 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [366-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPSSGDADEE AMDTAADESN DLNAPEHLER DLTAWIYNEE NLQKLIENTQ CEWTQFSVKS  60
   61 TMIRNVLQQL ENLFEENFKP KEKVLAQVIL LQDSVNPRQY QPLLERKRCE SLENRIEHFV 120
  121 KKQRLIVKNE TETE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle