| Protein: | NtR-PA |
| Organism: | Drosophila melanogaster |
| Length: | 585 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NtR-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
345.0 | [0..202] | [560..14] |
|
Region A: Residues: [1-198] |
1 11 21 31 41 51
| | | | | |
1 MYNLIKGSLA TYCCLCLLLI LIDPAESGQL STRFNVSFAQ LDSCETYSVP NTGYGYRRFY 60
61 MLRELSNNNR KAGERLHLKF YVLTAMDAHI LLSVTNHPRP NDRVYEIVIG AGGNTFSAIR 120
121 NAMGMRRVAT NQEPNLVSLY DPTPIEIVQN QNGELFVYIP GFKKEPLLQF IDEAPLVINY 180
181 LSFSSFGSNT ARWFYDCG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [199-585] |
1 11 21 31 41 51
| | | | | |
1 FDGYGSEIAP IVKEETKTEK LLSHLNIQAE NASMPANLSS ISFHFQTRSL AYEQTSSLLQ 60
61 TRMHMMMHWR DSRLVWKPED FGSLESFEHP DLRIWKPHMN VLNGALQSMG QVLQSYELMV 120
121 YANGSITLYA QNLQLASWCV DSARNWPSER VTCDIELGLN GQEGQENVAL IYDDQRKPIA 180
181 PNEHVNTPSG WSFTQMSVVL VENDSQRRYN PKGMMQKMTG DVAIEFTLQR NRSFYMTVFY 240
241 LPLIACQMFL ILSFVLRSTR RSSLILIALL IAAWGLMYMT RYASPHYVPP MMTAYKVIMM 300
301 TTTYCYILHI CIIWLDLYPP RSKAPGWLVR VINSNVLRCI LGLRFSDSTD YCDIQENPWH 360
361 HMAKILNNLS SILVIITFAI VDITSGF
|
| Detection Method: | |
| Confidence: | 74.522879 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
