| Protein: | Vrp1-PD, Vrp1-PC... |
| Organism: | Drosophila melanogaster |
| Length: | 751 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vrp1-PD, Vrp1-PC....
| Description | E-value | Query Range |
Subject Range |
|
|
293.0 | [0..4] | [750..844] |
|
Region A: Residues: [1-194] |
1 11 21 31 41 51
| | | | | |
1 MAIPPPPGPP PPPGPPPPPA MGGLKLGGAG GADARSALLS SIQKGTKLKK TTTVDKSGPA 60
61 LSGKVCGGDG GAGIGAKRTL NNNTSTSNHN NSSSSSNGLG NGTPKLGGLF EGLSQMPKLK 120
121 PVNGIRATPS AGSAATTTSK STTNSSAQQR SNSPPAATSA SNASNGPMDF NTELTKHLTL 180
181 KRQKQQQQQQ PQPP
|
| Detection Method: |  |
| Confidence: | 1.49 |
| Match: | 1p9hA |
| Description: | CRYSTAL STRUCTURE OF THE COLLAGEN-BINDING DOMAIN OF YERSINIA ADHESIN YadA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [195-345] |
1 11 21 31 41 51
| | | | | |
1 TNNTHINATE ANLRTNRGPP PQPPKSANSN DSILERMNIP RTAPTPPFGN SSSVKAASPT 60
61 LSDSGSNSSG SGGGSGSVKS KAANLNISLG NSFVNSSKST VSASTASLNS SLTSSTGSVR 120
121 NLAPNKSTLF GGSSGSSSGS SSGGGYASVH K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [346-534] |
1 11 21 31 41 51
| | | | | |
1 SSPPSTADST PSVTPTPPPL QLPMKPAISF GKPNFAPKPP GLNQLAMANG QQRPAVTRHH 60
61 SMKSPRSPPA AGIVNGLVFP TQQHLGTLRG PLQFHGSESS SPNTSAGSMR CAPNPPKSRP 120
121 SVKPPPPPTP ARSFSNTNLN NIGGSTMFSA VNTALIQSSA ISSQAPSPPI TQPPSSSSSS 180
181 NSVAALRDQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [535-649] |
1 11 21 31 41 51
| | | | | |
1 FRGGAGMSNG APSPPLPPTP APSSNPSSAS ASPKSLLRDN VKPIILNGGP LNPPAPPPHR 60
61 SCPPPPPPQR QSSNQDRVKY WIDKTVYSFK KILHINRQGR HSGESVKVIN MLNSK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [650-751] |
1 11 21 31 41 51
| | | | | |
1 RNGGSGSGSA PVPPQRHSSI RPNAPSTPPT HMANASHQFG SSSGLSSGSG AGAAASVGRL 60
61 VNDLETKFGK RFHNVTEFPK PPPFLNIQKV YPSRTFKATN GM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
