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View Structure Prediction Details

Protein: Sdc-PA
Organism: Drosophila melanogaster
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Sdc-PA.

Description E-value Query
Range
Subject
Range
gi|437283, gi|627167 - pir||A54949 syndecan precursor - fruit fly (Drosophila melanogaster), gi|437283|gb|AAC34307.1| synde...
207.0 [0..1] [399..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKQKISVE PLLLVAILIG VLVAATHAQD QKSVKPSAAA PSAAASRPHD EIYIDDDSIE  60
   61 GSGGRGGIHE DLEKDPDYSG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGFGPDDEDA EPDQHSHSSH NTRISQSSNS GINTAHTPTQ TSSTIPTTST STPMPTTTPT  60
   61 ATTPASTTTA AATQISSFAN SSSTTTTTLA PTIPAEPQQP LFPPFDKDLD TESSGDGIDA 120
  121 DAEDD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [206-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEDDGDDKDY DYNKELDKEI DIDGPEPGHL PPVVHHNTVE TGHIPTTDEI DVDGGDEDDN  60
   61 GDSDIDGPRI GGNDGDITER GPGAGGSNVH ELDPNTNVNS QPSDTKGIDH RPNGNEVVIM 120
  121 SEDDRTSSFF SQPGILAAVI GGAVVGLLCA ILVVMFIVYR MRKKDEGSYA LDEPKRSPAN 180
  181 NSYAKNANNR EFYA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle