YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4038-PA
Organism:	Drosophila melanogaster
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4038-PA.

Description	E-value	Query Range	Subject Range
gi\|26344814 - gi\|26344814\|dbj\|BAC36056.1\| unnamed protein product [Mus musculus]	202.0	[0..58]	[165..70]
gi\|56566042 - gi\|56566042\|gb\|AAV98357.1\| nucleolar protein family A member 1 [Homo sapiens]	198.0	[0..58]	[162..59]
gi\|50746777 - gi\|50746777\|ref\|XP_420650.1\| PREDICTED: hypothetical protein [Gallus gallus]	197.0	[0..61]	[165..57]
GAR1_DANRE - H/ACA ribonucleoprotein complex subunit 1 OS=Danio rerio GN=gar1 PE=2 SV=1	195.0	[0..62]	[165..57]
gi\|78369061, gi\|... - gi\|78369061\|ref\|NP_001030380.1\| nucleolar protein family A, member 1 [Bos taurus], gi\|61553379\|gb\|AA...	195.0	[0..59]	[165..56]
GAR1_XENTR - H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1	194.0	[0..61]	[165..55]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFGKPRGGG GGGGRGFGGG GGGGGRGFGG GGGGRGGGGG RGGGGGFGRG GGGRGGGRGA  60
   61 FDTGPPERVI PLGNYVYSCQ NDLVCKVDIQ DVPYFNAPIF LENKEQVGKI DEIFGTVRDY 120
  121 SVSIKLSDNV YANSFKPNQK LFIDPGKLLP IARFLPKPPQ PKGAKKAFTN NRGGGGGGGG 180
  181 FGGRGGGRGG GGRGGGGGRG GGGFRGGAGR NGGGGGGGGF NRGRGGGGGG GGGRGRW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.69
Match:	2hvyB
Description:	No description for 2hvyB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits