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View Structure Prediction Details

Protein: CG9313-PA, FBpp0...
Organism: Drosophila melanogaster
Length: 739 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9313-PA, FBpp0....

Description E-value Query
Range
Subject
Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
468.0 [0..190] [739..873]

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Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKPGKGDG KQVKGKRTSK NKTDGPGGGG GDADDFDAWM KSRQLLKPDD QLDLTEAELG  60
   61 EEITKVLTPT NTNIVRNLVV YSFKEGEFVP APLPGNTVTL IAFAGNSLHV DSDEGRRQIE 120
  121 ESDEIGYPLP MPNYTVVEQR ETDNVDGEEG EGEEDDDGAT AKDAAVEDED VEEEDDEEAK 180
  181 GTEGDEGEGE GEGEGAAARQ EDDEPAHQAA AVSSKKRKLI NQFNYCERGA LTYTNPKRNV 240
  241 DTQTIPPPRS QFGA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [255-739]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVLQWVIYDS YMENFAESQK DGTKKEERKR GKREKKFRDK SAIAEQLNKK YLKCWQILER  60
   61 MINQNIYDDI AHDYRYWEDP ADEFREGEGN LLPLWKFQYD KTKKMNVTDI LFNPSYYDLF 120
  121 AVCFGSHDFM KQTNEGYLCL FTVKNPSFPD YIIQTDCGVM CCDIHPTYPF LAVIGLYDGN 180
  181 VAVYNLREDC KEPLYVSRGV NCKHGECVWQ IKWGLDMADG EVNFFSVSSD GRVFNWILMQ 240
  241 NKLWVTTIIT LYRENGLVDG PDGTKVTLKS GGSCMVFHPV DNKIFLVGTE CGYIYKCSTA 300
  301 FSSKYLMTYY AHNMSVYRID FNRFNSNIFV SCGADWMVKV WEDMRPDPLF IFDLGAAVGD 360
  361 VKWAPYSSTV FAAVTTEGKV HVFDLNVNKY KAICIQAVVP KRKNKLTRLS FNEKLAFIVV 420
  421 GDEKGVTTSL KLSPNLRMMV KPPKKQLYLD QNTLQIGKLE KLLSLVRELP EGSTAVPDAA 480
  481 TTVRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.30103
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle