| Protein: | sm-PB |
| Organism: | Drosophila melanogaster |
| Length: | 404 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sm-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
262.0 | [0..5] | [391..20] |
|
Region A: Residues: [1-141] |
1 11 21 31 41 51
| | | | | |
1 MNNLNANASA FLWQVPPPQQ LTPQSVQQQT VQSVQSMQSV QHSQLLQSAV VSQPRKFGGN 60
61 KSNYNYMQNH AIMGPGGGPM GGIGGNPNIY RKRHSINTYN AGLYQTNEPP LLGPGAAFPP 120
121 FGAPEYHTTT PENWKGAAIH P
|
| Detection Method: |  |
| Confidence: | 21.154902 |
| Match: | 2adbA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD2 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [142-404] |
1 11 21 31 41 51
| | | | | |
1 TGLMKEPAGV VPGRNAPVAF TPQGQAQGAV MMVYGLDHDT SNTDKLFNLV CLYGNVARIK 60
61 FLKTKEGTAM VQMGDAVAVE RCVQHLNNIP VGTGGKIQIA FSKQNFLSEV INPFLLPDHS 120
121 PSFKEYTGSK NNRFLSPAQA SKNRIQPPSK ILHFFNTPPG LTEDQLIGIF NIKDVPATSV 180
181 RLFPLKTERS SSGLIEFSNI SQAVLAIMKC NHLPIEGKGT KFPFIMKLCF SSSKSMNGAW 240
241 NNAASEGMIE KENEVDTKVD IYN
|
| Detection Method: | |
| Confidence: | 33.09691 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.49612884560266 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| transporter activity | 0.00947930769815086 | bayes_pls_golite062009 |
