| Protein: | gi|21626942, gi|... |
| Organism: | Drosophila melanogaster |
| Length: | 423 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21626942, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
218.0 | [0..1] | [423..1] |
|
Region A: Residues: [1-158] |
1 11 21 31 41 51
| | | | | |
1 MNNLNANASA FLWQVPPPQQ LTPQSVQQQT VQSVQSMQSV QHSQLLQSAV VSQPRKFGGN 60
61 KSNYNYMQNH AIMGPGGGPM GGIGGNPNIY RKRHSINTYN AGLYQTNGKQ RKSLFSIPEN 120
121 VVMLESQPPL LGPGAAFPPF GAPEYHTTTP ENWKGAAI
|
| Detection Method: |  |
| Confidence: | 13.69897 |
| Match: | 2adbA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD2 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [159-423] |
1 11 21 31 41 51
| | | | | |
1 HPTGLMKEPA GVVPGRNAPV AFTPQGQAQG AVMMVYGLDH DTSNTDKLFN LVCLYGNVAR 60
61 IKFLKTKEGT AMVQMGDAVA VERCVQHLNN IPVGTGGKIQ IAFSKQNFLS EVINPFLLPD 120
121 HSPSFKEYTG SKNNRFLSPA QASKNRIQPP SKILHFFNTP PGLTEDQLIG IFNIKDVPAT 180
181 SVRLFPLKTE RSSSGLIEFS NISQAVLAIM KCNHLPIEGK GTKFPFIMKL CFSSSKSMNG 240
241 AWNNAASEGM IEKENEVDTK VDIYN
|
| Detection Method: | |
| Confidence: | 32.0 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| 4.67888641618755 | bayes_pls_golite062009 | |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| binding | 3.49612884560266 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| snRNA binding | 1.76821382294389 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| protein binding | 1.14508556628804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| U1 snRNA binding | 0.612226940931031 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
| transporter activity | 0.00947930769815086 | bayes_pls_golite062009 |
