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View Structure Prediction Details

Protein: SdhA-PA, SdhA-PC...
Organism: Drosophila melanogaster
Length: 661 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SdhA-PA, SdhA-PC....

Description E-value Query
Range
Subject
Range
gi|195149710, gi... - gi|195149710|ref|XP_002015799.1| GL11254 [Drosophila persimilis], gi|194109646|gb|EDW31689.1| GL1125...
gi|125807291, gi... - gi|54635515|gb|EAL24918.1| GA14410 [Drosophila pseudoobscura pseudoobscura], gi|125807291|ref|XP_001...
gi|54635515|gb|E... - GA14410-PA [Drosophila pseudoobscura], GA14410 [Drosophila pseudoobscura pseudoobscura]
583.0 [0..1] [661..1]

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Predicted Domain #1
Region A:
Residues: [1-661]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGIMRVPSI LAKNAVASMQ RAAAVGVQRS YHITHGRQQA SAANPDKISK QYPVVDHAYD  60
   61 AIVVGAGGAG LRAAFGLVAE GFRTAVITKL FPTRSHTIAA QGGINAALGN MEEDDWKWHM 120
  121 YDTVKGSDWL GDQDAIHYMT REAPKAVIEL ENYGMPFSRT QDGKIYQRAF GGQSLKFGKG 180
  181 GQAHRCCAVA DRTGHSLLHT LYGQSLSYDC NYFVEYFALD LIFEDGECRG VLALNLEDGT 240
  241 LHRFRAKNTV IATGGYGRAF FSCTSAHTCT GDGTAMVARQ GLPSQDLEFV QFHPTGIYGA 300
  301 GCLITEGCRG EGGYLINGNG ERFMERYAPV AKDLASRDVV SRSMTIEIME GRGAGPEKDH 360
  361 VYLQLHHLPP KQLAERLPGI SETAMIFAGV DVTREPIPVL PTVHYNMGGV PTNYRGQVIT 420
  421 IDKDGKDVIV PGLYAAGEAA SSSVHGANRL GANSLLDLVV FGRACAKTIA ELNKPGAPAP 480
  481 TLKENAGEAS VANLDKLRHA NGQITTADLR LKMQKTMQHH AAVFRDGPIL QDGVNKMKEI 540
  541 YKQFKDIKVV DRSLIWNSDL VETLELQNLL ANAQMTIVSA EARKESRGAH AREDFKVRED 600
  601 EYDFSKPLDG QQKKPMDQHW RKHTLSWVCN DNGDITLDYR NVIDTTLDNE VSTVPPAIRS 660
  661 Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 157.0
Match: 1yq3A
Description: Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle