YRC Public Data Repository - Protein Structure Prediction

Protein:	Rab4-PB, Rab4-PA
Organism:	Drosophila melanogaster
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rab4-PB, Rab4-PA.

Description	E-value	Query Range	Subject Range
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	233.0	[0..1]	[212..1]
YPTC1_CHLRE - GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1 gi\|78522571 - gi\|78522571\|gb\|ABB46195.1\| YptC1 [Chlamydomonas incerta]	233.0	[0..1]	[210..1]
gi\|303750, gi\|738940 - gi\|738940\|prf\|\|2001457H GTP-binding protein, gi\|303750\|dbj\|BAA02116.1\| GTP-binding protein [Pisum sa...	233.0	[0..1]	[212..1]
gi\|37360618 - gi\|37360618\|dbj\|BAC98287.1\| mKIAA3012 protein [Mus musculus]	232.0	[0..1]	[211..52]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	232.0	[0..1]	[211..4]
gi\|114638536 - gi\|114638536\|ref\|XP_001150399.1\| PREDICTED: similar to RAB1B, member RAS oncogene family [Pan troglo...	232.0	[0..1]	[210..55]
gi\|7643790 - gi\|7643790\|gb\|AAF65510.1\| small GTP-binding protein [Capsicum annuum]	232.0	[0..1]	[212..1]
RAB1_DIPOM - Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1	232.0	[0..1]	[211..1]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	232.0	[0..1]	[212..1]
gi\|109511883 - gi\|109511883\|ref\|XP_001061706.1\| PREDICTED: similar to Ras-related protein Rab-1B [Rattus norvegicus...	232.0	[0..1]	[210..88]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETYDYLFK FLIIGSAGSG KSCLLHHFIE SKFKDDSSHT IGVEFGSRIV NVGGKSVKLQ  60
   61 IWDTAGQERF RSVTRSYYRG AAGALLVYDA TSRDSFNALT NWLNDARTLA SPNIVILLVG 120
  121 NKKDLEEARD VTFLEASTFA QENELIFLET SAKTGENVEE AFLKCSKTIL AKIETGELDP 180
  181 ERIGSGIQYG GAALRNLQTR QRSINKPDCT CRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2bmdA
Description:	high resolution structure of GDP-bound human Rab4a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits