| Protein: | ssp4-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1517 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssp4-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
896.0 | [0..1] | [1517..1] |
|
Region A: Residues: [1-302] |
1 11 21 31 41 51
| | | | | |
1 MDVETQEIRQ ARQRASVKWL LSKAFNNRVP DNLKEPFYRD HENQERLKPQ IIVELGNATL 60
61 YCQTLANLYS DPNYQSMNHW SIIQTLARKG VPVAESADMP ITETVLIQTN PLRINAHMSV 120
121 IESLMVLYAK EISSGDRVMA AIRRISGNNY QAPTGQSYEQ ALLGWISHAC AALKKRIIKE 180
181 VDAGLPDDNG SRLQTPDIPP VRDFQDLCDG ICLALLISYY CPKVVPWTSV RINYLPAVED 240
241 SIHNILLVCN FSQKHLPYTV MHMTPEDVTY MRGSMKLNLV VLLTDLFNLF EIHPAKCVCY 300
301 PG
|
| Detection Method: |  |
| Confidence: | 2.26 |
| Match: | 1sh5A |
| Description: | Crystal structure of actin-binding domain of mouse plectin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 6.0562477479739 | bayes_pls_golite062009 |
| microtubule binding | 5.63808442303747 | bayes_pls_golite062009 |
| tubulin binding | 5.63161872515663 | bayes_pls_golite062009 |
| actin binding | 5.4843525466095 | bayes_pls_golite062009 |
| actin filament binding | 3.58546515893973 | bayes_pls_golite062009 |
| binding | 2.58893177478913 | bayes_pls_golite062009 |
| protein binding | 2.38389820189848 | bayes_pls_golite062009 |
| microtubule plus-end binding | 2.34204492212228 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 2.33067686982903 | bayes_pls_golite062009 |
| dynein binding | 0.282231591450947 | bayes_pls_golite062009 |
|
Region A: Residues: [303-1181] |
1 11 21 31 41 51
| | | | | |
1 MDGQVPHSNS FGGGLNRRST PPNEYQTVQS NNFDGNHAEA FVVHKSRGIT TLASMHSQQQ 60
61 QQLHQQQQHQ QQYHQQPLQQ HPSQSQLQIQ QQEPLVPARL RQAKEKTNVE SKADERGDFV 120
121 AAGRPSNWEQ SRRPSFAGRR SRRNSSSEDS QLTIENFGGS QDQLNTLGRY ERDRERKLSN 180
181 TSVGSYPVEP AVAVRSSIAD ARGTLQLGYD TDSGSEKQDR ETEKYSMRRQ VSVDNVPTVS 240
241 SHNLSNAGSP LPVARHKQHS SDKDYSSNSG MTPDAYNDSR STSGYDPEST PVRKSSTSSM 300
301 PASPAAWQLD VGDDDMRSLE NASKLSTIRM KLEEKRRRIE QDKRKIEMAL LRHQEKEDLE 360
361 SCPDVMKWET MSNESKRTPD MDPVDLDKYQ AYNAPVSAYS SRPPSRDPYQ QQLHHQQQQP 420
421 MPMPQPMQYV NEHGQYMSPP QPAHYMPQQA QQPQSIYSDN GAAYNHSNHS PYGGTPQYRS 480
481 SVVYDDYGQP TNHFYLHESS PQPQAHQHPQ RRTWAHSAAA AAYEQQQQIQ PSLVDVNAWQ 540
541 TQQHQKQKQT WMNRPPSSAG APSPGSFMLH QNGGGGGGGG GGGELQHLFQ VQASPQHGQR 600
601 QVSGSNGVQR QQSLTNLRDN RSPKAPQNMG MPMGMPMQQE DMMAPQSICF IGDEEDVDEL 660
661 ERNIIESMQS THISDFVHQQ QQQHQHQQQL QQQQRLQGHS GRGSSSEDYD SGEMISNKLN 720
721 ITSGNLTYRI PSPSRPSIQA NSFQDPRAMA AASGGEDQPP EKGFYISFDD EQPKRPKPPL 780
781 RAKRSPKKES PPGSRDSVDN QATLKRESLS HLHNNNNIGF GNDDVNSKPV TRHSIHGLNN 840
841 SNSVKSPGNA TYNKYTDEPP IQLRQLAVSG AMSPTSNER
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1y0fA |
| Description: | No description for 1y0fA was found. |
|
Region A: Residues: [1182-1432] |
1 11 21 31 41 51
| | | | | |
1 HHLDDVSNQS PQQTQQPMSP TRLQQSSNNA EAAKNKALVI GADSTNLDPE SVDEMERRKE 60
61 KIMLLSLQRR QQQEEAKARK EIEASQKREK EREKEEERAR KKEEQMARRA AILEQHRLKK 120
121 AIEEAEREGK TLDRPDLHVK LQSHSSTSTT PRLRQQRTTR PRPKTIHVDD ASVDISEASS 180
181 ISSRGKKGSS SNLTGPKLYK QPAAKSNRGI ILNAVEYCVF PGVVNREAKQ KVLEKIARSE 240
241 AKHFLVLFRD A
|
| Detection Method: | |
| Confidence: | 8.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1433-1517] |
1 11 21 31 41 51
| | | | | |
1 GCQFRALYSY QPETDQVTKL YGTGPSQVEE VMFDKFFKYN SGGKCFSQVH TKHLTVTIDA 60
61 FTIHNSLWQG KRVQLPSKKD MALVI
|
| Detection Method: | |
| Confidence: | 64.09691 |
| Match: | 1ugjA |
| Description: | Solution structure of a murine hypothetical protein from RIKEN cDNA 2310057J16 |
Matching Structure (courtesy of the PDB): |
|
