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View Structure Prediction Details

Protein: NiPp1-PA
Organism: Drosophila melanogaster
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NiPp1-PA.

Description E-value Query
Range
Subject
Range
gi|194110354, gi... - gi|195151143|ref|XP_002016507.1| GL11611 [Drosophila persimilis], gi|194110354|gb|EDW32397.1| GL1161...
gi|54636007, gi|... - gi|54636007|gb|EAL25410.1| GA21451 [Drosophila pseudoobscura pseudoobscura], gi|125808694|ref|XP_001...
gi|54636007|gb|E... - GA21451-PA [Drosophila pseudoobscura], GA21451 [Drosophila pseudoobscura pseudoobscura]
293.0 [0..1] [383..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSYDIPSW AGKPPTGLHL DVLKDDKLVQ KLMVDEKRCY LFGRNSQMND FCIDHASCSR  60
   61 VHSAFVYHKH LNIAYLVDLG STHGTFIGTL RLEAHKPTQL QINSTFHFGA STRNYILRER 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.522879
Match: 2jpeA
Description: No description for 2jpeA was found.

Predicted Domain #2
Region A:
Residues: [121-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSGHHSNIME DLPLSETSDG ALLGLPESQT ELDNLTEYNT AHNRRISMLG IDDDTNMRKQ  60
   61 NALKQGRRTR NV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [193-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFNDEEIVIN PEDVDPNVGR FRNLVQTTVV PAKRARCDVN HMGIHSGNSS LSSANAAHVH  60
   61 QMFQQSLVDM KQQHREMPPP NAVLHSPTNS LYQGLPAEMH GKGDLEPISP LSIGSKLGLL 120
  121 LPNPAPEVLP VYDEAVETST LAQKLAVANA NVRRFGEDPH DSSGEGDSLC PQKKKYAKEA 180
  181 WPGRKPMLGQ L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle