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View Structure Prediction Details

Protein: bdg-PC, bdg-PA, ...
Organism: Drosophila melanogaster
Length: 1331 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bdg-PC, bdg-PA, ....

Description E-value Query
Range		 Subject
Range
gi|21428722 - gi|21428722|gb|AAM50021.1| SD06851p [Drosophila melanogaster]
 1063.0 [0..1] [1331..1]

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Predicted Domain #1
Region A:
Residues: [1-222] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKEQQAAG RDFKRNSNAY SSLPPTGTGA GCSGAALGSG TGTGKRARSK QHQLEHEQFG  60
   61 LSNSLSSESI RQACAYYDDE LSDEDLIEIQ QTPQAFHQQT KQPLQLQPIS FRLGDELGDE 120
  121 RSAFCGSQEM QQVPLSTPIK QAAETDEALC VLSELDAILD VHDVSQLNGT CSSGSVNSGS 180
  181 DDDKVEDYLM DLDNYLEEMD NALNREDSLI IIDGHTSLKR EP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [223-464] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTRTLPLSRK KKSSKKKSED QEAAQGDFQR EHQLRKTFSC SLRPTSQIAS SSGSLETSTE  60
   61 PVMDVWRRQS MRRALEQEDT KATVAMEREE DDIPTLLVEL PPRRDAEMRR CFSQGDCQAS 120
  121 VAPTVGSQML TEAHIFDNLL QTNARASSEE PRPRQYGRRL EGPPTPVRPL ILAQSRPQSA 180
  181 PTRVQMREPQ LQDTPTHPIM STCSELSSAR SSRMPSPVSL PSDSSSSGSS SAEHDQEPDP 240
  241 VQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [465-575] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTMCSASST TPLEPLHQLQ LLLREKCGFN SQWPHAGSRT LALIGCTLGV FNMCRFAVLT  60
   61 INFGGNFLLQ FLLLSVIFGI PLLWLQMCLG AKIRAGPVSM WKISPICAGV G

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.83
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [576-1122] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IALVMQQCFL ALYSTVSLAW ILVYLRDVFP TAARSGYRWQ EMAFPYRYDA SNATGNLTQT  60
   61 VAEYFNVVVL QRLHLANHPD ASGIRFHVND RQLAFYLALI WAAVFLILCK GLKSLGKLAY 120
  121 IIYTLPLVAL AVVTAKFVYV VDPSRIQNIF AASDFDDFLV NSNSWTAATQ ETFLTWGLLG 180
  181 ASVIAITSRS HTNANKAALR RDAILLVLFT LIGLGLMALL ALCCAQILWQ HGYVYVPGSF 240
  241 ENPDCYTSIY SLQSNTNPYL LSYPRSLIPH YSSFIGETYR RNRTMIHVES GFQALRFISE 300
  301 IFPAVLSLAS DSISWVWAAV AFATFAGFGL AQLCVMWKPI SSALGNSTSS VLLSCVTGLL 360
  361 LSIPFATEMG ISILYYVDFL LGGSWFIPII WTAQIFGVFL IRGRPYNGDD LVNDLRLCGS 420
  421 MSAFLALSWN VLLPIGLITL SVVDYKASLS NQFYYWRGKS YFTYWSRKMG SLIQIGVLLV 480
  481 IPVTAIIQIY RYLAHGPPDI LERIQLLYRP PEEGEEPRRP SARQTASQSR RNALGQTTEG 540
  541 GQHDAQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 137.0
Match: 1occA
Description: Mitochondrial cytochrome c oxidase, subunit I
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transporter activity 2.73170381418733 bayes_pls_golite062009
transmembrane transporter activity 2.62482996567382 bayes_pls_golite062009
substrate-specific transporter activity 2.27184952386199 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.17385920299423 bayes_pls_golite062009
ion transmembrane transporter activity 1.99291315963413 bayes_pls_golite062009
cation transmembrane transporter activity 1.91328118970772 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.80711393777315 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 1.46596274907844 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 1.33785775698886 bayes_pls_golite062009
catalytic activity 0.295281150854022 bayes_pls_golite062009
binding 0.268640698115938 bayes_pls_golite062009

Predicted Domain #5
Region A:
Residues: [1123-1331] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPPKYTPPP SYTTATGARL AKLLRQSIRR SVRRVLGDSS RTRPVLSLDA ESASPAAPPD  60
   61 YLTILTNPAG SSFNADPSPA SSSSPESIEI DQRPVGYSQR SQSLGRKLHR SGASTLERRP 120
  121 YTAEDVVTIL RSSVRHRQSQ GGGNLVTAST LPRPPTAAMS THLEDASFRS IENLVLNAEP 180
  181 PDRTPGVELE LELEAGQAEE CARNNTSVI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle