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View Structure Prediction Details

Protein: ave-PA
Organism: Drosophila melanogaster
Length: 106 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ave-PA.

Description E-value Query
Range
Subject
Range
gi|125808051, gi... - gi|54635790|gb|EAL25193.1| GA15868-PA [Drosophila pseudoobscura], gi|125808051|ref|XP_001360618.1| G...
98.0 [0..3] [105..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEETINSTQ NKTRTKTTRP KAVYLWTVSD VLKWYRRHCG EYTQYEQLFA QHDITGRALL  60
   61 RITDSSLQRM GVTDNRDREA IWREIVKQRL KTDIMEIRDM ERLNIY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.39794
Match: 1b0xA
Description: EphA4 receptor tyrosine kinases
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.68693141392111 bayes_pls_golite062009
protein binding 2.12913758162323 bayes_pls_golite062009
signal transducer activity 1.1654493104048 bayes_pls_golite062009
molecular transducer activity 1.1654493104048 bayes_pls_golite062009
transcription regulator activity 0.48507851856487 bayes_pls_golite062009
DNA binding 0.100984195487788 bayes_pls_golite062009
nucleic acid binding 0.0714547564567439 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle