YRC Public Data Repository - Protein Structure Prediction

Protein:	Cpr50Cb-PA
Organism:	Drosophila melanogaster
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr50Cb-PA.

Description	E-value	Query Range	Subject Range
gi\|112983758, gi... - gi\|12862591\|dbj\|BAB32481.1\| cuticle protein [Bombyx mori], gi\|112983758\|ref\|NP_001036866.1\| cuticle ...	132.0	[0..2]	[165..1]
gi\|54641081, gi\|... - gi\|54641081\|gb\|EAL29832.1\| GA20079-PA [Drosophila pseudoobscura], gi\|125980121\|ref\|XP_001354093.1\| G...	121.0	[0..64]	[176..24]
gi\|58378630, gi\|... - gi\|58378630\|ref\|XP_308909.2\| cuticular protein 55, RR-2 family (AGAP006837-PA) [Anopheles gambiae st... AGAP006837-PA - CPR55: cuticular protein RR-1 family (CPR55)\|protein_coding\|2L:39151550:39152078:1\|gene:AGAP006837	121.0	[0..4]	[178..2]
gi\|66564779 - gi\|66564779\|ref\|XP_624729.1\| PREDICTED: similar to CG1259-PB [Apis mellifera]	119.0	[0..50]	[150..184]
gi\|24657353, gi\|... - gi\|7292458\|gb\|AAF47862.1\| CG15007-PA [Drosophila melanogaster], gi\|24657353\|ref\|NP_647873.1\| CG15007...	119.0	[0..35]	[165..6]
gi\|108882505, gi... - gi\|157126718\|ref\|XP_001654719.1\| cuticle protein, putative [Aedes aegypti], gi\|108882505\|gb\|EAT46730...	117.0	[0..83]	[163..49]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSFKSFVLL SLSLAAISAY AYAQIAPGSN AYLPPTKNGY DYSEPKTPFK PGPPGRPAAP  60
   61 GPRPPAP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGTPRNIPGQ PGDDHVHVPG MPYDFEYAVQ DPETANDYAH KASSDGDVVT GEYRVQMPDG  60
   61 RTQIVRYTAD WKTGYHADVS YEGEATYPQG PQPGARGGGG GGAGGAGGYK Y

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	9.958607
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.889	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits