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View Structure Prediction Details

Protein: Cpr50Ca-PA
Organism: Drosophila melanogaster
Length: 815 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpr50Ca-PA.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
304.0 [0..29] [778..690]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMAICGGGI PTLMLLIMTA IISLVQAADT WQRLPSLETF SSYEDMQRYF DQRNFRSMRQ  60
   61 IDNPTGDTYL AAFNQYNEQV ENQSPRRVAQ THSRIKREQR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLPTAPRMLR FELADAVEPS PELKQILRQY HARALKENPT AASPASTSQA PTPAVSPTKA  60
   61 TKAKSRKPRR QRRSVVGAQQ PADFKVQMIP FEETDAREPD PITAQLIKKA RSLDLQSQAT 120
  121 RSTDFRHTKP QVARKQPIQV RIRKTKRSKR SAPQMIKFEL ADAKAMPQRS GKQMVSEAVP 180
  181 TLLTMETQRN NTQAPQLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [299-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTPRVEDND ILTGEATAET KRMYVYKEAP VNSGHVKTKK SLSTLPHEVQ KVISQLMKDG  60
   61 LGGKAYVKYL PAQKSDYEHY KAKSLSYGGK PLVNYVKYIN KP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [401-637]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEPAASPSPV QVHIQPVPVV EQLRYVYKPH YAAVAPTIAQ PIVVQEAPAP TAAVEEVHHT  60
   61 YTAELAPPPT QSVEVVVPQF RPSKPDPLLA EAPAIYGKPQ EAYNSYELQP EASPLIKIEY 120
  121 HAQPDGINEH YKQLPEFQQL STLIGKSPDD QIHGLTYLLA KEMQAKLQRQ GKQLVDRPQD 180
  181 STAPILFHPG QGASPAPTLK TLLEHGSLGV QPGRLIGMAK TKQYVPIIEP GNNDVKE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [638-721]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPAVPSSAAS KLPTPSSYID YTHGHGLSNG YEGVTNAEEP VTTVEHVVHH PTVATQLHHQ  60
   61 VLLPKQQHHH HQQQHHGLVA TVLP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [722-815]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AELDSDKGVN GLHFVNSDED KSLQQYASKY EFGYRIRDFH TGNDFGHKQN RDLHGVTRGQ  60
   61 YHILLPDGRI QNVIYHADDT GFHADVSFEG ATKH

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 11.568636
Match: PF00379.14
Description: No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle