YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG6197-PA
Organism: Drosophila melanogaster
Length: 883 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG6197-PA.

Description E-value Query
Range
Subject
Range
SYF1_RAT - Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1
373.0 [0..26] [874..28]

Back

Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTKTIKSLN LEINFEVEDV PYEEEILRNA YSVKHWLRYI DHKAKAPNNG VNMVYERALK  60
   61 ELPGSYKIWH NYL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 2fo7A
Description: Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [74-572]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTRRKQVRGK IPTDPMYEEV NSAFERALVF MHKMPRIWMD YGAFMTSQCK ITRTRHVFDR  60
   61 ALRALPITQH GRIWPLYLQF VRRFEMPETA LRVYRRYLKL FPEDTEEYVD YLQEADRLDE 120
  121 AAQQLAHIVD NEHFVSKHGK SNHQLWNELC DLISKNPHKV HSLNVDAIIR GGLRRYTDQL 180
  181 GHLWNSLADY YVRSGLFDRA RDIYEEAIQT VTTVRDFTQV FDEYAQFEEL SLNRRMEQVA 240
  241 ANEAATEEDD IDVELRLSRF EYLMERRLLL LNSVLLRQNP HNVHEWHKRV TLYEDKPAEI 300
  301 ISTYTEAVQT VQPKQAVGKL HTLWVEFAKF YEANGQVEDA RVVFERGTEV EYVKVEDLAA 360
  361 VWCEWAEMEL RQQQFEAALK LMQRATAMPK RKIAYYDDTE TVQARLHRSL KVWSMYADLE 420
  421 ESFGTFKTCK AVYERIIDLK ICTPQIIINY GMFLEEHNYF EEAYRAYEKG ISLFKWPNVY 480
  481 DIWNSYLTKF LERYGGTKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.30103
Match: 2gw1A
Description: No description for 2gw1A was found.

Predicted Domain #3
Region A:
Residues: [573-774]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERARDLFEQC LDQCPPEHAK YFYLLYAKLE EEHGLARHAM SVYDRATSAV KEDEMFDMYN  60
   61 IFIKKAAEIY GLPRTREIYE KAIESLPEQN MRHMCVKFAE LETKLGEVDR ARAIYAHCSQ 120
  121 VCDPRITADF WQTWKEFEVR HGNEDTMREM LRIKRSVQAT YNTQVNMMAA QFLSTNNGAA 180
  181 ADAGAGAGPD AMRLLEEKAR QA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 1ouvA
Description: Helicobacter cysteine rich protein C (HcpC)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.96958278583621 bayes_pls_golite062009
protein binding 0.559882636047776 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [775-883]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAESKQKPIE KAASNIMFVR GETQGGAKDK KDTVVNPDEI DIGDSDEDDE EEDDDEENEM  60
   61 TNENQASAAV TKTDEEGLVM KKLRFEQKAI PAKVFGSLKP SNQGDSDGE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.09691
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle