YRC Public Data Repository - Protein Structure Prediction

Protein:	Fsn-PA, Fsn-PB
Organism:	Drosophila melanogaster
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Fsn-PA, Fsn-PB.

Description	E-value	Query Range	Subject Range
gi\|91094905 - gi\|91094905\|ref\|XP_973449.1\| PREDICTED: similar to CG4643 CG4643-PA [Tribolium castaneum]	227.0	[0..5]	[255..5]
FBSP1_DANRE - F-box/SPRY domain-containing protein 1 OS=Danio rerio GN=fbxo45 PE=2 SV=2	226.0	[0..5]	[255..41]
FBSP1_XENLA - F-box/SPRY domain-containing protein 1 OS=Xenopus laevis GN=fbxo45 PE=2 SV=1	220.0	[0..8]	[255..32]
gi\|27734108, gi\|... - ref\|NP_775615.1\| F-box protein 45 [Mus musculus], gi\|22267973\|gb\|AAH26799.1\| F-box protein 45 [Mus ...	220.0	[0..8]	[255..38]
gi\|61818451 - gi\|61818451\|ref\|XP_612338.1\| PREDICTED: similar to F-box protein 45 [Bos taurus]	219.0	[0..8]	[255..33]
FBSP1_AEDAE - F-box/SPRY domain-containing protein 1 OS=Aedes aegypti GN=Fsn PE=3 SV=1	219.0	[0..6]	[255..9]
gi\|125808490, gi... - gi\|54635944\|gb\|EAL25347.1\| GA18323 [Drosophila pseudoobscura pseudoobscura], gi\|125808490\|ref\|XP_001... FBSP1_DROPE - F-box/SPRY domain-containing protein 1 OS=Drosophila persimilis GN=Fsn PE=3 SV=1 FBSP1_DROPS - F-box/SPRY domain-containing protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Fsn PE=3 SV=1	216.0	[0..1]	[255..1]
gi\|48140090 - gi\|48140090\|ref\|XP_397079.1\| PREDICTED: similar to CG4643-PA, isoform A [Apis mellifera]	216.0	[0..2]	[255..1]
gi\|74002949 - gi\|74002949\|ref\|XP_851899.1\| PREDICTED: similar to F-box protein 45 [Canis familiaris]	216.0	[0..8]	[255..35]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDPVAALCN YNVLEVIFSY LELDDLSHCS QVCKSWYHFL NDENSDVWRW HCLNKLPKES  60
   61 LKSDLLASV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.21
Match:	2e31A
Description:	No description for 2e31A was found.

Predicted Domain #2

Region A:
Residues: [70-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STYKTKLRAY FHAWSPNDCS RNVYIKPNGF TLHRNPVAQS TDAARGKIGF RHGRHTWEVI  60
   61 WEGPLGTVAV IGISTKEAAL QCHGYVALLG SDDQSWGWNL VENHLLHNGD MQGSYPLLNN 120
  121 APKYQVGERI RVILDCEDNT LSFEKNYEFL GVAFRGLPDK KLYPTVSAVY GNTEVSMVYL 180
  181 GTPLDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	2v24A
Description:	No description for 2v24A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits