| Protein: | Nmda1-PD, Nmda1-... |
| Organism: | Drosophila melanogaster |
| Length: | 324 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nmda1-PD, Nmda1-....
| Description | E-value | Query Range |
Subject Range |
|
|
237.0 | [0..2] | [324..171] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MSWQSVPQYP QYQDPNQQYN YGGGNPPQGG YGGYPPQGGY PPQGPPQGYP PYAQGGAQPY 60
61 PQPYGQGPPP GGYAPQPGFI QPPPSAGGYG AYDDPESQPK NFSFDDQSIR RGFIRKVYLI 120
121 LMGQLIVTFG AVAL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [135-324] |
1 11 21 31 41 51
| | | | | |
1 FVYHEGTKTF ARNNMWLFWV ALGVMLVTML SMACCESVRR QTPTNFIFLG LFTAAQSFLM 60
61 GVSATKYAPK EVLMAVGITA AVCLALTIFA LQTKYDFTMM GGILIACMVV FLIFGIVAIF 120
121 VKGKIITLVY ASIGALLFSV YLIYDTQLMM GGEHKYSISP EEYIFAALNL YLDIINIFMY 180
181 ILTIIGASRD
|
| Detection Method: | |
| Confidence: | 1.07 |
| Match: | 1xioA |
| Description: | Anabaena sensory rhodopsin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor activity | 5.02577574778994 | bayes_pls_golite062009 |
| transmembrane receptor activity | 4.78146266698118 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 4.50732599816163 | bayes_pls_golite062009 |
| signal transducer activity | 4.06754387760954 | bayes_pls_golite062009 |
| molecular transducer activity | 4.06754387760954 | bayes_pls_golite062009 |
| photoreceptor activity | 2.255650071924 | bayes_pls_golite062009 |
| peptide receptor activity, G-protein coupled | 2.24641021606542 | bayes_pls_golite062009 |
| peptide receptor activity | 2.19154385339624 | bayes_pls_golite062009 |
| G-protein coupled photoreceptor activity | 2.18283583899056 | bayes_pls_golite062009 |
| peptide binding | 2.13067531676633 | bayes_pls_golite062009 |
| neurotransmitter receptor activity | 2.01689979100071 | bayes_pls_golite062009 |
| neurotransmitter binding | 1.93267309344853 | bayes_pls_golite062009 |
| binding | 1.73271497611234 | bayes_pls_golite062009 |
| adrenoceptor activity | 1.2968322466925 | bayes_pls_golite062009 |
| amine binding | 0.990396049262525 | bayes_pls_golite062009 |
| neuropeptide receptor activity | 0.968922552138296 | bayes_pls_golite062009 |
| neuropeptide binding | 0.968922552138296 | bayes_pls_golite062009 |
| hydrolase activity | 0.728551374396809 | bayes_pls_golite062009 |
| protein binding | 0.260551388866474 | bayes_pls_golite062009 |
