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View Structure Prediction Details

Protein: CG8841-PB, CG884...
Organism: Drosophila melanogaster
Length: 837 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8841-PB, CG884....

Description E-value Query
Range
Subject
Range
gi|62732626 - gi|62732626|gb|AAX94783.1| LD03464p [Drosophila melanogaster]
938.0 [0..1] [837..65]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTDSKLNF RKAIVQLTQK NQKIDPSDEQ FWEQFWQGHQ TTLEDVFALV TSSEIRQIRN  60
   61 ENPANLATLC YKAVEKLAQA VDSSCRTQAE QQCVLNCVRL LVRCLPYIFE DEKWRDFFWS 120
  121 SLPSQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [126-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKTMPLAQSL LNATCDLLFC PDFTVTATRR AGPEKAEELA NIDSCEYIWE AGVGFAQSPP  60
   61 HNAHMERRRT ELLKLLLTCF SEPMYRSPQQ SEEPNKWIAY FTSADNRHAL PLFTSFLNTV 120
  121 CS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [248-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDPVGFGVPY NHLLFADTTE PLVEACLQLL IVTLDHDMVV QQQLTQPGQA SYDEGNCGDN  60
   61 LFINYLSRVH RDEDFHFVLK GITRLLNNPL VQNYLPNSTK RLHCHQELLI LFWKICDYNK 120
  121 KFLYFVLKSS DVLDILIPIL YHLNYSRADQ SRVGLMHIGV FILLLLSGER NFGVRLNKAY 180
  181 SATVPMDI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [436-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVFTGTHADL LITVFHKIIA TGHQRLQPLF DCLLTILVNV SPYLKTLSMV ASVKMLHLLE  60
   61 AFSTPWFLLS APSNHHLVFF LLEIFNNIIQ YQFDGNSNLV YTIIRKRHVF HAMANL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [552-837]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTDMAGIAKC LSGRKTGGKF NLPRVPQRRT PAVSQELPSA HVPEEYNEED EDEDEEEIIN  60
   61 EEPKAEEDLE SETESHERSQ AGELQSDVLT AQPAEPGTLK TSLLDTPGIT QMTEREQAHP 120
  121 NDKPQVEDST DIVPYDRSAA STPTDERKST SPTELSRLSV AHRASIRMVP GESDRWTPTP 180
  181 EWIVSWRSKL PLQTIMRLLQ VLVPQVEKIC IDKGLTDESE ILKFLQHGTL VGLLPVPHPI 240
  241 LIRKYQANAG TTAWFRTYIW GVIYLRNVEP AIWYDTEVKL FEIQRV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.49
Match: 2grxC
Description: No description for 2grxC was found.

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Created and Maintained by: Michael Riffle