YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0311866, Tap...
Organism:	Drosophila melanogaster
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0311866, Tap....

Description	E-value	Query Range	Subject Range
gi\|38047569 - gi\|38047569\|gb\|AAR09687.1\| similar to Drosophila melanogaster BcDNA:GM12291 [Drosophila yakuba]	262.0	[0..1]	[166..1]
gi\|109132737, gi... - gi\|109132739\|ref\|XP_001087023.1\| PREDICTED: similar to Translocon-associated protein delta subunit p...	255.0	[0..15]	[166..21]
gi\|61371546, gi\|... - gi\|61371552\|gb\|AAX43688.1\| signal sequence receptor delta [synthetic construct], gi\|61371546\|gb\|AAX4...	251.0	[0..18]	[166..24]
gi\|114690610, gi... - gi\|114690612\|ref\|XP_001139292.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi\|114... SSRD_PONAB - Translocon-associated protein subunit delta OS=Pongo abelii GN=SSR4 PE=2 SV=2 SSR4 - signal sequence receptor, delta (translocon-associated protein delta) SSRD_PONPY - Translocon-associated protein subunit delta precursor - Pongo pygmaeus (Orangutan) gi\|208967408, gi... - gi\|60654985\|gb\|AAX32056.1\| signal sequence receptor delta [synthetic construct], gi\|60654983\|gb\|AAX3...	250.0	[0..18]	[166..24]
gi\|55726115 - gi\|55726115\|emb\|CAH89831.1\| hypothetical protein [Pongo abelii] gi\|197100743 - gi\|197100743\|ref\|NP_001127202.1\| signal sequence receptor, delta (translocon-associated protein delt...	249.0	[0..18]	[166..27]
gi\|57112873 - gi\|57112873\|ref\|XP_538202.1\| PREDICTED: similar to Translocon-associated protein, delta subunit prec... tr\|M3W1G5\|M3W1G5... - Signal sequence receptor subunit 4 OS=Felis catus GN=SSR4 PE=4 SV=1	249.0	[0..18]	[166..24]
SSRD_MOUSE - Translocon-associated protein subunit delta OS=Mus musculus GN=Ssr4 PE=1 SV=1	248.0	[0..17]	[166..22]
gi\|125810432\|ref... - GA21495-PA [Drosophila pseudoobscura], GA21495 [Drosophila pseudoobscura pseudoobscura] gi\|125810432, gi... - gi\|54636667\|gb\|EAL26070.1\| GA21495 [Drosophila pseudoobscura pseudoobscura], gi\|125810432\|ref\|XP_001...	248.0	[0..1]	[166..1]
SSRD_BOVIN - Translocon-associated protein subunit delta OS=Bos taurus GN=SSR4 PE=2 SV=1	247.0	[0..18]	[166..23]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQLFAICL IAAVCASGVY GSCKATVSSF STQDATILTQ LAHVGEFTLQ CSGAAPASLF  60
   61 AEFPCGKVVP VAKVGDNKYQ VSWVEDIKQG SSGNVQVRLF DEDGYANVRK AQRDGDKVSS 120
  121 VKSLLDISVP TKGAYKGPWI KAELLAAFLV GGFAYFAFTT KGKVQS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.167491
Match:	PF05404.3
Description:	No description for PF05404.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.283	N/A	N/A	b.76.2	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
View	Download	0.235	N/A	N/A	b.60.1	Lipocalins
View	Download	0.231	N/A	N/A	b.60.1	Lipocalins
View	Download	0.215	N/A	N/A	b.40.4	Nucleic acid-binding proteins
View	Download	0.204	N/A	N/A	b.76.2	Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits