YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Su(var)2-10-PI
Organism: Drosophila melanogaster
Length: 640 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Su(var)2-10-PI.

Description E-value Query
Range
Subject
Range
gi|220950582 - gi|220950582|gb|ACL87834.1| Su(var)2-10-PA [synthetic construct]
Su(var)2-10-PD - The gene Suppressor of variegation 2-10 is referred to in FlyBase by the symbol Dmel\Su(var)2-10 (CG...
559.0 [0..1] [565..1]

Back

Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKTRSQTAR TQAENAATSS SPGHQSTSSA PIAVNPFDST KYKECEQMVQ MLRVVELQKI  60
   61 LSFLNISFAG RKTDLQSRIL SFLRTNLELL APKVQEVYAQ SV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 1v66A
Description: Solution structure of human p53 binding domain of PIAS-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleic acid binding 3.06883460395012 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [103-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEQNATLQYI DPTRMYSHIQ LPPTVQPNPV GLVGSGQGVQ VPGGQMNVVG GAPFLHTHSI  60
   61 NSQLPIHPDV RLKKLAFYDV LGTLIKPSTL VPR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [196-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTQRVQEVPF YFTLTPQQAT EIASNRDIRN SSKVEHAIQV QLRFCLVETS CDQEDCFPPN  60
   61 VNVKVNNKLC QLPNVIPTNR PNVEPKRPPR PVNVTSNVKL SPTVTNTITV QWCPDYTRSY 120
  121 CLAVYLVKKL TSTQLLQRMK TKGVKPADYT RGLIKEKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [354-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEDADCEIAT TMLKVSLNCP LGKMKMLLPC RASTCSHLQC FDASLYLQMN ERKPTWNCPV  60
   61 CDKPAIYDNL VIDGYFQEVL GSSLLKSDDT EIQLHQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 2yu4A
Description: No description for 2yu4A was found.

Predicted Domain #5
Region A:
Residues: [450-640]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGSWSTPGLR SETQILDTPS KPAQKVEVIS DDIELISDDA KPVKRDLSPA QDEQPTSTSN  60
   61 SETVDLTLSD SDDDMPLAKR RPPAKQAVAS STSNGSGGGQ RAYTPAQQPQ QSESPEQQAS 120
  121 RQSPEKQTVS EQQLQQQQHE QPATAAVHAS LLESLAAAVA DQKHFQLLDL AAVAAAAAAT 180
  181 ASSGQSQNAG P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle