YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CG1550-PA
Organism: Drosophila melanogaster
Length: 626 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1550-PA.

Description E-value Query
Range
Subject
Range
gi|125807249, gi... - gi|54635494|gb|EAL24897.1| GA13769 [Drosophila pseudoobscura pseudoobscura], gi|125807249|ref|XP_001...
gi|125807249|ref... - GA13769-PA [Drosophila pseudoobscura], GA13769 [Drosophila pseudoobscura pseudoobscura]
690.0 [0..1] [626..1]

Back

Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGINKYNEF VALHKPQLES SGIPLIFWPA LFRKLTTETF DAGEALQLML IDYDEDEQQN  60
   61 PAEDDDSPNP VFALGVAREQ GIKASDPQAI YLVDHAWTFR LNGARQQLEE YPQLAERLSA 120
  121 ITGVDLELKD RVDKILRRLW KYCHAYSIGS EGLSDEERQP IWYVMDEVGS AVNHSDDPNF 180
  181 RLVPLLYLNT QTTYSVLFPI RDCDVGEAVT RDMV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [215-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHVAKDAPQR PALLLPWRDA DLTGESFLQV EPRADYFTSG HIPETYPKGD T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [266-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPLPARSRCD PLKVYAEYEV VRRHLTSSEF ILVNNADEAD VLWLTHHFKN FEDFADRS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [324-626]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGKFINQFPF EYVITIKDLL SIVGRRAAKE HHDSLTLETF PAWLPTTYNL STEVKEFAAY  60
   61 YQTRAAKGLD NHWIIKPWNL ARGLDTHITD NIKQIVRLPA TGPKIAQKYI ERPVLFSRQE 120
  121 VEGSVKFDIR YVILLKSVKP LKAYIHRKFF LRFANHPFTL DHFDDYEKHY TVMNYQTEAQ 180
  181 LHHVKCDDFL TLWQEQYPDN DWSALEQQIC SMLLEVLQCA SQADPPCGLA PCAQSRALYA 240
  241 ADIMLRWKDD KEKLMEPQLL EINWTPDCKR ACDYYPDFFN DIFRLLFLDE ENDDSFRVLT 300
  301 PDN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.22
Match: 2qb5A
Description: No description for 2qb5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle