YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0307863, kap...
Organism:	Drosophila melanogaster
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0307863, kap....

Description	E-value	Query Range	Subject Range
gi\|47211161 - gi\|47211161\|emb\|CAF92536.1\| unnamed protein product [Tetraodon nigroviridis]	188.0	[0..2]	[200..1]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	188.0	[0..2]	[185..4]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	188.0	[0..2]	[185..4]
gi\|109081641 - gi\|109081641\|ref\|XP_001103732.1\| PREDICTED: similar to RAB11a, member RAS oncogene family [Macaca mu...	188.0	[0..3]	[193..93]
gi\|148230336, gi... - gi\|27924279\|gb\|AAH45014.1\| Rab1-prov protein [Xenopus laevis], gi\|148230336\|ref\|NP_001080138.1\| RAB1... gi\|52345478, gi\|... - gi\|52345478\|ref\|NP_001004787.1\| RAB1A, member RAS oncogene family [Xenopus (Silurana) tropicalis], g...	187.0	[0..2]	[201..4]
RAB1_DIPOM - Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1	186.0	[0..2]	[187..1]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	186.0	[0..2]	[199..1]
RIC1_ORYSA - (P40392) Ras-related protein RIC1	186.0	[0..2]	[198..1]
gi\|27817324, gi\|... - gi\|68371242\|ref\|XP_689181.1\| PREDICTED: similar to RAB1A, member RAS oncogene family isoform 1 [Dani... gi\|55742328 - ref\|NP_001007162.1\| RAB1A, member RAS oncogene family [Danio rerio]	186.0	[0..2]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNAKIGKVG KVLVCGMKGV GKTALIEQLV YGHVNPETEL HPTIEDIYVA SVDTGRGGAR  60
   61 ETLRIYDTAG LQGEQQQLPR HYLQFPDAFV LVYDPMDPRS LDMLADIKAD IEKHKEKKEI 120
  121 PVVVLANVRA RAAPNPVEKV MDRANIWCQR ERIKHYTVNA MERPSLYEPF TTLCARLHPM 180
  181 QTKSTFPQLR QVMQNRQKSE A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1ukvY
Description:	Structure of RabGDP-dissociation inhibitor in complex with prenylated YPT1 GTPase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.7440092435568	bayes_pls_golite062009
purine ribonucleotide binding	1.1290341608517	bayes_pls_golite062009
ribonucleotide binding	1.12882056931709	bayes_pls_golite062009
purine nucleotide binding	1.12279673986875	bayes_pls_golite062009
nucleotide binding	1.10746768649988	bayes_pls_golite062009
guanyl nucleotide binding	0.388587892299301	bayes_pls_golite062009
guanyl ribonucleotide binding	0.372638007722845	bayes_pls_golite062009
GTP binding	0.364508542344128	bayes_pls_golite062009
ATP binding	0.103046188112829	bayes_pls_golite062009
adenyl ribonucleotide binding	0.0844273923195277	bayes_pls_golite062009
adenyl nucleotide binding	0.0631983477225431	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: