| Protein: | so-PA |
| Organism: | Drosophila melanogaster |
| Length: | 416 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for so-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
237.0 | [0..1] | [306..1] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MLQHPATDFY DLAAANAAAV LTARHTPPYS PTGLSGSVAL HNNNNNNSST SNNNNSTLDI 60
61 MAHNGGGAGG GLHLNSSSNG GGGGGVVSGG GSG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [94-282] |
1 11 21 31 41 51
| | | | | |
1 GRENLPSFGF TQEQVACVCE VLQQAGNIER LGRFLWSLPQ CDKLQLNESV LKAKAVVAFH 60
61 RGQYKELYRL LEHHHFSAQN HAKLQALWLK AHYVEAEKLR GRPLGAVGKY RVRRKFPLPR 120
121 TIWDGEETSY CFKEKSRSVL RDWYSHNPYP SPREKRDLAE ATGLTTTQVS NWFKNRRQRD 180
181 RAAEHKDGS
|
| Detection Method: | |
| Confidence: | 27.69897 |
| Match: | 1cqtA |
| Description: | Oct-1 POU Homeodomain; Oct-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [283-416] |
1 11 21 31 41 51
| | | | | |
1 TDKQHLDSSS DSEMEGSMLP SQSAQHQQQQ QQQQHSPGNS SGNNNGLHQQ QLQHVAAEQG 60
61 LQHHPHQPHP ASNIANVAAT KSSGGGGGGG VSAAAAAQMQ MPPLTAAVAY SHLHSVMGAM 120
121 PMTAMYDMGE YQHL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
