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View Structure Prediction Details

Protein: so-PA
Organism: Drosophila melanogaster
Length: 416 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for so-PA.

Description E-value Query
Range
Subject
Range
gi|54635383, gi|... - gi|54635383|gb|EAL24786.1| GA10770-PA [Drosophila pseudoobscura], gi|125806969|ref|XP_001360212.1| G...
237.0 [0..1] [306..1]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQHPATDFY DLAAANAAAV LTARHTPPYS PTGLSGSVAL HNNNNNNSST SNNNNSTLDI  60
   61 MAHNGGGAGG GLHLNSSSNG GGGGGVVSGG GSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRENLPSFGF TQEQVACVCE VLQQAGNIER LGRFLWSLPQ CDKLQLNESV LKAKAVVAFH  60
   61 RGQYKELYRL LEHHHFSAQN HAKLQALWLK AHYVEAEKLR GRPLGAVGKY RVRRKFPLPR 120
  121 TIWDGEETSY CFKEKSRSVL RDWYSHNPYP SPREKRDLAE ATGLTTTQVS NWFKNRRQRD 180
  181 RAAEHKDGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 1cqtA
Description: Oct-1 POU Homeodomain; Oct-1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [283-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDKQHLDSSS DSEMEGSMLP SQSAQHQQQQ QQQQHSPGNS SGNNNGLHQQ QLQHVAAEQG  60
   61 LQHHPHQPHP ASNIANVAAT KSSGGGGGGG VSAAAAAQMQ MPPLTAAVAY SHLHSVMGAM 120
  121 PMTAMYDMGE YQHL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle