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View Structure Prediction Details

Protein: CG10396-PA
Organism: Drosophila melanogaster
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG10396-PA.

Description E-value Query
Range
Subject
Range
gi|109109269, gi... - gi|109109269|ref|XP_001113547.1| PREDICTED: similar to Cytochrome c oxidase subunit 4 isoform 1, mit...
255.0 [0..7] [176..1]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFPCMKLR KLFQMTRRRF ASGGDGIRLM VADRQVVGHG INGRPIYFDS PDCPFPAIRY  60
   61 REVSPELCAL REKELDDWKK LSLDEKKQLY RYSFCQTYAE FQHITPEWKM CLGVALWLVS 120
  121 IGIAISITMK TVLYGKLPDT FNDERQSAQL RRIIQLQMNP ITGLASKWCY RENKWK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.154902
Match: 1occD
Description: Mitochondrial cytochrome c oxidase subunit IV
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 12.8672436325695 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 12.8672436325695 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 12.8672436325695 bayes_pls_golite062009
heme-copper terminal oxidase activity 12.5536631591417 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 6.39367011108548 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 6.23942388461757 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 5.62960572959435 bayes_pls_golite062009
oxidoreductase activity 5.40847023303734 bayes_pls_golite062009
cation transmembrane transporter activity 5.36812403817205 bayes_pls_golite062009
ion transmembrane transporter activity 5.16334360779969 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.74071132470389 bayes_pls_golite062009
substrate-specific transporter activity 4.53098112436118 bayes_pls_golite062009
binding 1.71909236803171 bayes_pls_golite062009
catalytic activity 0.600497727931764 bayes_pls_golite062009
protein binding 0.441962683592616 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle