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View Structure Prediction Details

Protein: d4-PC
Organism: Drosophila melanogaster
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for d4-PC.

Description E-value Query
Range
Subject
Range
gi|220952536, gi... - gi|220952536|gb|ACL88811.1| d4-PA [synthetic construct], gi|220942560|gb|ACL83823.1| d4-PA [syntheti...
d4-PA - The gene d4 is referred to in FlyBase by the symbol Dmel\d4 (CG2682, FBgn0033015). It is a protein_c...
317.0 [0..1] [495..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKSAYEKT LVVNIANFEK IQNFLNDKEK YKEILENSEN FNTRLCIERR LRMPFLDPQT  60
   61 GVAQTHCSLF MKKKQRMP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLRHGQIYTY PSSRWRKPKR QYLLNPNQSF RAYQYREHNL QHSHHQTHQH HHHIPSSGVA  60
   61 VPQNPHLAES AAIAATDGNS MGASGDNDSK DSHANVEKEW FHDEMDTSHF HHGDEFEDDF 120
  121 DSDNDFDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [207-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYTSRGKRKK CSRPRRTNAN VEGTPKRGRK GNRRKNAVEG ESDRKRRAGG NSANTSAAAA  60
   61 AAAAAVAHAA CTAAAVASTG LYASHSNSAS PIPINDDNSQ SGLILPTNIS SSYDKTSSDA 120
  121 GASNDSIPLA TMVAINAGLT TSNVCNAHPV QTGTNQTVFA TG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [369-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKVKQRVERD IAQPSPYCDF CLGDQRENKK TNMPEELVSC SDCGRSGHPS CLQFTANMII  60
   61 SVKRYRWQCI ECKYCSICGT SDNDDQLLFC DDCDRGYHMY CLSPPLVTPP EGSWSCKLCM 120
  121 EEFHKIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 2ysmA
Description: No description for 2ysmA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle