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View Structure Prediction Details

Protein: d4-PC
Organism: Drosophila melanogaster
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for d4-PC.

Description E-value Query
Range
Subject
Range
gi|220952536, gi... - gi|220952536|gb|ACL88811.1| d4-PA [synthetic construct], gi|220942560|gb|ACL83823.1| d4-PA [syntheti...
d4-PA - The gene d4 is referred to in FlyBase by the symbol Dmel\d4 (CG2682, FBgn0033015). It is a protein_c...
317.0 [0..1] [495..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKSAYEKT LVVNIANFEK IQNFLNDKEK YKEILENSEN FNTRLCIERR LRMPFLDPQT  60
   61 GVAQTHCSLF MKKKQRMP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLRHGQIYTY PSSRWRKPKR QYLLNPNQSF RAYQYREHNL QHSHHQTHQH HHHIPSSGVA  60
   61 VPQNPHLAES AAIAATDGNS MGASGDNDSK DSHANVEKEW FHDEMDTSHF HHGDEFEDDF 120
  121 DSDNDFDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [207-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYTSRGKRKK CSRPRRTNAN VEGTPKRGRK GNRRKNAVEG ESDRKRRAGG NSANTSAAAA  60
   61 AAAAAVAHAA CTAAAVASTG LYASHSNSAS PIPINDDNSQ SGLILPTNIS SSYDKTSSDA 120
  121 GASNDSIPLA TMVAINAGLT TSNVCNAHPV QTGTNQTVFA TG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [369-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKVKQRVERD IAQPSPYCDF CLGDQRENKK TNMPEELVSC SDCGRSGHPS CLQFTANMII  60
   61 SVKRYRWQCI ECKYCSICGT SDNDDQLLFC DDCDRGYHMY CLSPPLVTPP EGSWSCKLCM 120
  121 EEFHKIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 2ysmA
Description: No description for 2ysmA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle