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View Structure Prediction Details

Protein: mRpS18B-PB, mRpS...
Organism: Drosophila melanogaster
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpS18B-PB, mRpS....

Description E-value Query
Range
Subject
Range
RT18B_MOUSE - 28S ribosomal protein S18b, mitochondrial OS=Mus musculus GN=Mrps18b PE=1 SV=1
206.0 [0..20] [197..10]
CE03656 - status:Partially_confirmed UniProt:Q22470 protein_id:CAA91421.1
202.0 [0..12] [196..2]
gi|187035513, gi... - gi|39590011|emb|CAE61009.1| Hypothetical protein CBG04747 [Caenorhabditis briggsae], gi|187035513|em...
gi|157765356 - gi|157765356|ref|XP_001675021.1| Hypothetical protein CBG04747 [Caenorhabditis briggsae AF16]
200.0 [0..12] [196..2]
gi|58389991, gi|... - gi|58389991|ref|XP_317419.2| ENSANGP00000011588 [Anopheles gambiae str. PEST], gi|55237631|gb|EAA122...
200.0 [0..12] [201..1]
gi|73972105 - gi|73972105|ref|XP_532057.2| PREDICTED: similar to 28S ribosomal protein S18b, mitochondrial precurs...
196.0 [0..17] [197..7]
gi|47087117, gi|... - gi|47087117|ref|NP_997699.1| mitochondrial ribosomal protein S18B [Rattus norvegicus], gi|46237662|e...
195.0 [0..20] [197..10]
RT18B_PANTR - 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes GN=MRPS18B PE=3 SV=1
193.0 [0..20] [197..10]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPIARGIYI GLVNITRNSR GALHTASALR CKAETSTEEN NAAATEGEGE DNASGSAPDP  60
   61 KDRSKPIPVE TSIRYLKSAA YKQTYGEDFV WTQYRRN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKGMYAPRKT RKTCIRQNRI STGNPCPICR DEYLVLDYRN TELLEQFISP HSGDVLSYSK  60
   61 TGLCQKSHLR LMVAVQQARD SGYLTYDVPF REYDYSEYYG QEQKQKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.045757
Match: 1vs5R
Description: No description for 1vs5R was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.70687222528823 bayes_pls_golite062009
structural molecule activity 9.13243988503345 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle