YRC Public Data Repository - Protein Structure Prediction

Protein:	CG10268-PA
Organism:	Drosophila melanogaster
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG10268-PA.

Description	E-value	Query Range	Subject Range
gi\|21430758 - gi\|21430758\|gb\|AAM51057.1\| SD12705p [Drosophila melanogaster]	298.0	[0..1]	[189..1]
PMVK_MOUSE - Phosphomevalonate kinase OS=Mus musculus GN=Pmvk PE=1 SV=3	290.0	[0..4]	[185..11]
gi\|33303795 - gi\|33303795\|gb\|AAQ02411.1\| phosphomevalonate kinase [synthetic construct]	281.0	[0..4]	[185..11]
gi\|56605780, gi\|... - gi\|56605780\|ref\|NP_001008353.1\| phosphomevalonate kinase [Rattus norvegicus], gi\|55778503\|gb\|AAH8634...	281.0	[0..4]	[185..11]
PMVK - phosphomevalonate kinase	280.0	[0..4]	[185..11]
gi\|109017109 - gi\|109017109\|ref\|XP_001114509.1\| PREDICTED: phosphomevalonate kinase [Macaca mulatta]	280.0	[0..4]	[185..11]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKIVLISGK RKCGKDYISE RLQRRLGSRS CIVRISEPIK SEWARKLQLD LDALLGDGPY  60
   61 KEKYRRDMIV WSDEVRAQDY GYFCRVAMEE ALSRQQTPYI LVSDVRRKND IRWFRETYGP 120
  121 ERVITLRLTS RPETRSARGW TFTAGIDDVP SECDLDDLAD GFDVVLANDE ELDQEAIDIL 180
  181 LDRLQLQYR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.62
Match:	2if2A
Description:	No description for 2if2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits