YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL4-PA
Organism:	Drosophila melanogaster
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL4-PA.

Description	E-value	Query Range	Subject Range
CE14028 - ribosomal protein status:Confirmed UniProt:O17005 protein_id:AAB69933.1	298.0	[0..9]	[291..3]
gi\|54645450\|gb\|E... - GA19152-PA [Drosophila pseudoobscura], GA19152 [Drosophila pseudoobscura pseudoobscura] gi\|194117865, gi... - gi\|195160102\|ref\|XP_002020915.1\| GL14082 [Drosophila persimilis], gi\|194117865\|gb\|EDW39908.1\| GL1408... gi\|125986720, gi... - gi\|54645450\|gb\|EAL34189.1\| GA19152 [Drosophila pseudoobscura pseudoobscura], gi\|125986720\|ref\|XP_001...	295.0	[0..1]	[296..1]
MRPL4 - mitochondrial ribosomal protein L4	294.0	[0..32]	[285..36]
gi\|109484239, gi... - ref\|XP_343355.1\| similar to mitochondrial ribosomal protein L4 isoform a [Rattus norvegicus], gi\|157...	290.0	[0..1]	[285..1]
RL4_GEOSE - 50S ribosomal protein L4 OS=Geobacillus stearothermophilus GN=rplD PE=1 SV=1	287.0	[0..68]	[275..2]
RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus (strain HTA426) GN=rplD PE=3 SV=1 gi\|220706749, gi... - gi\|221089323\|ref\|ZP_03558843.1\| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61], gi\|220706749\|gb... RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus GN=rplD PE=3 SV=1	285.0	[0..68]	[275..2]
gi\|55715752 - gb\|AAH86149.1\| Unknown (protein for MGC:98570) [Xenopus laevis] RM04_MOUSE - 39S ribosomal protein L4, mitochondrial OS=Mus musculus GN=Mrpl4 PE=1 SV=1	283.0	[0..16]	[285..20]
RM04_BOVIN - 39S ribosomal protein L4, mitochondrial OS=Bos taurus GN=MRPL4 PE=1 SV=1	282.0	[0..19]	[285..23]
gi\|187038160, gi... - gi\|39581608\|emb\|CAE58393.1\| Hypothetical protein CBG01522 [Caenorhabditis briggsae], gi\|187038160\|em... gi\|157760101 - gi\|157760101\|ref\|XP_001672393.1\| Hypothetical protein CBG01522 [Caenorhabditis briggsae AF16]	280.0	[0..9]	[291..3]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNNILKTSR QVLYPVARTF SRSGNHGNVV TEAAATVGAP PATRSPLILP QDYTDCLPVS  60
   61 RNTARQAWIE NTDAVAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKVGLIELHP DVFAAQPRVD IIQENVEWQS KYRYVSMAHT KTRAEVRGGG RKPWPQKGGG  60
   61 RARHGSLRSP MLKGGGVVHG PRSPTTHFYM LPFYKRVLGL TSTLSVKLAQ DDLHIIDNVD 120
  121 IPTGDAEFLK DLIAERNWGP SVLIVDEDHM FPANICQASD DLGYVNLMPT FGLNVYSMLK 180
  181 HDTLVLTVAA VKHLEQRLLY QLNRNDAASK GGKFKLDQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	2ftcD
Description:	No description for 2ftcD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits