YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpL4-PA
Organism:	Drosophila melanogaster
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL4-PA.

Description	E-value	Query Range	Subject Range
CE14028 - ribosomal protein status:Confirmed UniProt:O17005 protein_id:AAB69933.1	298.0	[0..9]	[291..3]
gi\|54645450\|gb\|E... - GA19152-PA [Drosophila pseudoobscura], GA19152 [Drosophila pseudoobscura pseudoobscura] gi\|194117865, gi... - gi\|195160102\|ref\|XP_002020915.1\| GL14082 [Drosophila persimilis], gi\|194117865\|gb\|EDW39908.1\| GL1408... gi\|125986720, gi... - gi\|54645450\|gb\|EAL34189.1\| GA19152 [Drosophila pseudoobscura pseudoobscura], gi\|125986720\|ref\|XP_001...	295.0	[0..1]	[296..1]
MRPL4 - mitochondrial ribosomal protein L4	294.0	[0..32]	[285..36]
gi\|109484239, gi... - ref\|XP_343355.1\| similar to mitochondrial ribosomal protein L4 isoform a [Rattus norvegicus], gi\|157...	290.0	[0..1]	[285..1]
RL4_GEOSE - 50S ribosomal protein L4 OS=Geobacillus stearothermophilus GN=rplD PE=1 SV=1	287.0	[0..68]	[275..2]
RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus (strain HTA426) GN=rplD PE=3 SV=1 gi\|220706749, gi... - gi\|221089323\|ref\|ZP_03558843.1\| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61], gi\|220706749\|gb... RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus GN=rplD PE=3 SV=1	285.0	[0..68]	[275..2]
gi\|55715752 - gb\|AAH86149.1\| Unknown (protein for MGC:98570) [Xenopus laevis] RM04_MOUSE - 39S ribosomal protein L4, mitochondrial OS=Mus musculus GN=Mrpl4 PE=1 SV=1	283.0	[0..16]	[285..20]
RM04_BOVIN - 39S ribosomal protein L4, mitochondrial OS=Bos taurus GN=MRPL4 PE=1 SV=1	282.0	[0..19]	[285..23]
gi\|187038160, gi... - gi\|39581608\|emb\|CAE58393.1\| Hypothetical protein CBG01522 [Caenorhabditis briggsae], gi\|187038160\|em... gi\|157760101 - gi\|157760101\|ref\|XP_001672393.1\| Hypothetical protein CBG01522 [Caenorhabditis briggsae AF16]	280.0	[0..9]	[291..3]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNNILKTSR QVLYPVARTF SRSGNHGNVV TEAAATVGAP PATRSPLILP QDYTDCLPVS  60
   61 RNTARQAWIE NTDAVAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.666	a.64.2	Bacteriocin AS-48
View	Download	0.666	a.4.1	Homeodomain-like
View	Download	0.630	a.64.2	Bacteriocin AS-48
View	Download	0.594	a.64.2	Bacteriocin AS-48
View	Download	0.511	a.4.1	Homeodomain-like

Predicted Domain #2

Region A:
Residues: [78-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKVGLIELHP DVFAAQPRVD IIQENVEWQS KYRYVSMAHT KTRAEVRGGG RKPWPQKGGG  60
   61 RARHGSLRSP MLKGGGVVHG PRSPTTHFYM LPFYKRVLGL TSTLSVKLAQ DDLHIIDNVD 120
  121 IPTGDAEFLK DLIAERNWGP SVLIVDEDHM FPANICQASD DLGYVNLMPT FGLNVYSMLK 180
  181 HDTLVLTVAA VKHLEQRLLY QLNRNDAASK GGKFKLDQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	2ftcD
Description:	No description for 2ftcD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits