YRC Public Data Repository - Protein Structure Prediction

Protein:	CG4103-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4103-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|54645689\|gb\|E... - GA17959-PA [Drosophila pseudoobscura], GA17959 [Drosophila pseudoobscura pseudoobscura] gi\|125987191, gi... - gi\|54645689\|gb\|EAL34427.1\| GA17959 [Drosophila pseudoobscura pseudoobscura], gi\|125987191\|ref\|XP_001...	440.0	[0..1]	[286..1]
THG1_MOUSE - Probable tRNA(His) guanylyltransferase OS=Mus musculus GN=Thg1l PE=1 SV=1	433.0	[0..1]	[248..30]
gi\|57085243 - gi\|57085243\|ref\|XP_536453.1\| PREDICTED: similar to interphase cyctoplasmic foci protein 45 [Canis fa...	428.0	[0..1]	[248..130]
THG1_RAT - Probable tRNA(His) guanylyltransferase OS=Rattus norvegicus GN=Thg1l PE=2 SV=1	428.0	[0..1]	[246..30]
gi\|109079563 - gi\|109079563\|ref\|XP_001113603.1\| PREDICTED: similar to interphase cyctoplasmic foci protein 45 [Maca...	428.0	[0..1]	[249..30]
gi\|8923514, gi\|2... - gi\|8923514\|ref\|NP_060342.1\| interphase cyctoplasmic foci protein 45 [Homo sapiens], gi\|7020726\|dbj\|B...	427.0	[0..1]	[248..30]
THG1_BOVIN - Probable tRNA(His) guanylyltransferase OS=Bos taurus GN=THG1L PE=2 SV=1	427.0	[0..1]	[248..30]
gi\|114603135 - gi\|114603135\|ref\|XP_518066.2\| PREDICTED: interphase cytoplasmic foci protein 45 [Pan troglodytes]	427.0	[0..1]	[248..30]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSRFEYVK SFEQDDSILP NVWIVIRIDG KKFHKFSKTH DFEKPNDENA LNVMNAAATA  60
   61 VMQEFRDIVL AYGQSDEYSF VFRKETAAFK RRSAKLLTYV TSLFSSSYVM QWSKWMNLPL 120
  121 AYAPCFDGRV VLYPSEQNLK DYLSWRQADV HVNNLYNTAF WKLVLEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [168-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTNQQAEAK LRGTFSADKN ELLFQEFGIN YNNLPAMYRK GTILLRKRVI LGEKSRQAVV  60
   61 PLHEDLISSQ FWKEHTEILG KYVPGTYDAP QTFPRLVEMQ INGKDDNEAE EPQNLAGTS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits