YRC Public Data Repository - Protein Structure Prediction

Protein:	Acyp-PA, FBpp0310260
Organism:	Drosophila melanogaster
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Acyp-PA, FBpp0310260.

Description	E-value	Query Range	Subject Range
gi\|57641932, gi\|... - gi\|57641932\|ref\|YP_184410.1\| hydrogenase maturation protein HypF [Thermococcus kodakarensis KOD1], g...	150.0	[0..6]	[118..1]
gi\|18892549, gi\|... - gi\|18976931\|ref\|NP_578288.1\| hydrogenase expression/formation regulatory protein [Pyrococcus furiosu...	149.0	[0..3]	[118..4]
gi\|3257308, gi\|1... - gi\|3257308\|dbj\|BAA29991.1\| 773aa long hypothetical transcriptional regulatory protein hypF [Pyrococc... gi\|7449701 - pir\|\|A71079 probable transcription regulatory protein hypF - Pyrococcus horikoshii	141.0	[0..6]	[118..1]
gi\|7449700, gi\|5... - pir\|\|D75031 hydrogenase expression/formation regulatory protein (hypf) PAB1560 - Pyrococcus abyssi (... gi\|5458658, gi\|1... - gi\|5458658\|emb\|CAB50145.1\| hypF hydrogenase expression/formation regulatory protein [Pyrococcus abys...	140.0	[0..6]	[118..1]
gi\|75176429 - gi\|75176429\|ref\|ZP_00696573.1\| COG0068: Hydrogenase maturation factor [Shigella boydii BS512]	139.0	[0..1]	[119..25]
gi\|75187431, gi\|... - gi\|75187431\|ref\|ZP_00700698.1\| COG0068: Hydrogenase maturation factor [Escherichia coli E24377A], gi...	139.0	[0..1]	[119..1]
gi\|81246624, gi\|... - gi\|82545213\|ref\|YP_409160.1\| transcriptional regulatory protein [Shigella boydii Sb227], gi\|81246624...	139.0	[0..1]	[119..1]
gi\|73856753, gi\|... - gi\|74313276\|ref\|YP_311695.1\| transcriptional regulatory protein [Shigella sonnei Ss046], gi\|73856753...	138.0	[0..1]	[119..1]
gi\|213852357 - gi\|213852357\|ref\|ZP_03381889.1\| hydrogenase maturation protein [Salmonella enterica subsp. enterica ... gi\|25324739, gi\|... - gi\|25324739\|pir\|\|AF0845 hydrogenase maturation protein [imported] - Salmonella enterica subsp. enter... gi\|29138736, gi\|... - gi\|29143103\|ref\|NP_806445.1\| hydrogenase maturation protein [Salmonella enterica subsp. enterica ser... gi\|16761619 - gi\|16761619\|ref\|NP_457236.1\| hydrogenase maturation protein [Salmonella enterica subsp. enterica ser...	137.0	[0..1]	[119..1]
gi\|83569928, gi\|... - gi\|83569928\|ref\|ZP_00921376.1\| COG0068: Hydrogenase maturation factor [Shigella dysenteriae 1012], g...	137.0	[0..1]	[119..25]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATHNVHSCE FEVFGRVQGV NFRRHALRKA KTLGLRGWCM NSSRGTVKGY IEGRPAEMDV  60
   61 MKEWLRTTGS PLSSIEKVEF SSQRERDRYG YANFHIKPDP HENRPVHEGL GSSSSHHDSN 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	2acyA
Description:	ACYL-PHOSPHATASE (COMMON TYPE) FROM BOVINE TESTIS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.14991565197115	bayes_pls_golite062009
binding	0.631839068837998	bayes_pls_golite062009
hydrolase activity	0.17963476223629	bayes_pls_golite062009
protein binding	0.0854117951018196	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: