YRC Public Data Repository - Protein Structure Prediction

Protein:	Pect-PA
Organism:	Drosophila melanogaster
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Pect-PA.

Description	E-value	Query Range	Subject Range
Pect-PD - The gene Phosphoethanolamine cytidylyltransferase is referred to in FlyBase by the symbol Dmel\Pect ... gi\|220950540 - gi\|220950540\|gb\|ACL87813.1\| Pect-PA [synthetic construct]	223.0	[0..1]	[206..176]
gi\|157110699, gi... - gi\|157110699\|ref\|XP_001651208.1\| ethanolamine-phosphate cytidylyltransferase [Aedes aegypti], gi\|108...	209.0	[0..1]	[206..167]
gi\|118791965, gi... - gi\|118791965\|ref\|XP_320056.3\| ENSANGP00000012337 [Anopheles gambiae str. PEST], gi\|116117851\|gb\|EAA1...	201.0	[0..1]	[206..167]
gi\|91078712 - gi\|91078712\|ref\|XP_966534.1\| PREDICTED: similar to ethanolamine-phosphate cytidylyltransferase [Trib...	197.0	[0..1]	[200..169]
gi\|66543768 - gi\|66543768\|ref\|XP_624319.1\| PREDICTED: similar to Phosphoethanolamine cytidylyltransferase CG5547-P...	195.0	[0..1]	[204..163]
gi\|253795516, gi... - gi\|3153239\|gb\|AAC39754.1\| CTP:phosphocholine cytidylyltransferase b [Homo sapiens], gi\|253795516\|ref...	189.0	[0..3]	[201..42]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQDSAAKSP WTGCSQFLPT TQKIIQFSDG KSPNPGDKIV YVAGAFDLFH VGHLDFLEKA  60
   61 KKLGDYLIVG LHTDPVVNSY KGSNYPIMNL HERVLSVLAC KFVNEVVIGA PYCVTEELLE 120
  121 HFKIDVVCHG RTPIALENGK IDPYAVPKTR AIFELIDSGN EMTTERIVER IISHRLEYER 180
  181 RNQAKEKKEI EAFEALQRQK QTQKAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1od6A
Description:	Phosphopantetheine adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	3.09309591847834	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.09309591847834	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	3.07993621210451	bayes_pls_golite062009
catalytic activity	2.74718220535323	bayes_pls_golite062009
ligase activity	2.41532637410136	bayes_pls_golite062009
ethanolamine-phosphate cytidylyltransferase activity	0.592077754110181	bayes_pls_golite062009
glutamate-tRNA ligase activity	0.0472634197156401	bayes_pls_golite062009
methionine-tRNA ligase activity	0.00210321908285005	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: