YRC Public Data Repository - Protein Structure Prediction

Protein:	mRpS7-PA, FBpp03...
Organism:	Drosophila melanogaster
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpS7-PA, FBpp03....

Description	E-value	Query Range	Subject Range
RS7_THETN - 30S ribosomal protein S7 OS=Thermoanaerobacter tengcongensis GN=rpsG PE=3 SV=1 RS7_CALS4 - 30S ribosomal protein S7 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / J...	223.0	[0..50]	[217..1]
gi\|196253511, gi... - gi\|196253511\|ref\|ZP_03152135.1\| ribosomal protein S7 [Clostridium thermocellum DSM 4150], gi\|1961970... RS7_CLOTH - 30S ribosomal protein S7 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / N...	221.0	[0..50]	[217..1]
RS7_CARHZ - 30S ribosomal protein S7 OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-29...	221.0	[0..50]	[217..1]
gi\|56971302 - gi\|56971302\|gb\|AAH88232.1\| Mrps7 protein [Rattus norvegicus]	221.0	[0..4]	[217..25]
gi\|109118170 - gi\|109118170\|ref\|XP_001094995.1\| PREDICTED: similar to mitochondrial ribosomal protein S7 isoform 1 ...	220.0	[0..8]	[217..27]
gi\|220706744, gi... - gi\|221089318\|ref\|ZP_03558838.1\| ribosomal protein S7 [Geobacillus sp. Y412MC61], gi\|220706744\|gb\|EED... gi\|229499926, gi... - gi\|229499926\|ref\|ZP_04393603.1\| ribosomal protein S7 [Geobacillus sp. Y412MC52], gi\|229329205\|gb\|EEN... RS7_GEOKA - 30S ribosomal protein S7 OS=Geobacillus kaustophilus GN=rpsG PE=3 SV=1 RS7_GEOKA - 30S ribosomal protein S7 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsG PE=3 SV=1	219.0	[0..50]	[217..1]
RS7_GEOSE - 30S ribosomal protein S7 OS=Geobacillus stearothermophilus GN=rpsG PE=1 SV=3	219.0	[0..50]	[217..1]
RS7_AGRFC - 30S ribosomal protein S7 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpsG PE=3 SV=1 gi\|25294576, gi\|... - gi\|25294576\|pir\|\|AD2816 30S ribosomal protein S7 [imported] - Agrobacterium tumefaciens (strain C58,...	218.0	[0..44]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLGRIAEK TSRLSCLRLM SVYPTHYVEP IVQKYKQLEQ KNDLSKLYHV PIKAAVNKSS  60
   61 DTIFHDDTKH KMINYITKKG NSALARTLLS KTLELIKRTQ TEHMNLAKGE KTTINTNPET 120
  121 LLKQAVENCR PLLQVTAIKR GGVTYQVPVP ITTKRSYFLA MKWLLEAARE KERKVSLPEK 180
  181 LAWEILDAAH GQGRVIKRKD DLHRLCESNR AYAHYRWS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	1husA
Description:	RIBOSOMAL PROTEIN S7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.1836043075256	bayes_pls_golite062009
structural molecule activity	9.60531852031349	bayes_pls_golite062009
RNA binding	2.69930050072854	bayes_pls_golite062009
nucleic acid binding	1.46100724116736	bayes_pls_golite062009
binding	0.87606732735391	bayes_pls_golite062009
protein binding	0.060050417638174	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: