YRC Public Data Repository - Protein Structure Prediction

Protein:	Chrac-14-PB
Organism:	Drosophila melanogaster
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Chrac-14-PB.

Description	E-value	Query Range	Subject Range
gi\|15231796, gi\|... - gi\|6729485\|emb\|CAB67641.1\| transcription factor NF-Y, CCAAT-binding-like protein [Arabidopsis thalia...	159.0	[0..4]	[128..28]
gi\|22536010 - gi\|22536010\|gb\|AAN01148.1\| LEC1-like protein [Phaseolus coccineus]	152.0	[0..4]	[128..53]
gi\|148921418, gi... - gi\|50916531\|ref\|XP_468662.1\| putative DNA binding transcription factor [Oryza sativa (japonica culti...	152.0	[0..4]	[123..23]
gi\|218193036, gi... - gi\|37542669\|gb\|AAL47206.1\| HAP3-like transcriptional-activator [Oryza sativa (indica cultivar-group)...	151.0	[0..4]	[123..23]
gi\|3152421, gi\|8... - gi\|83767937\|dbj\|BAE58076.1\| unnamed protein product [Aspergillus oryzae], gi\|3152421\|dbj\|BAA28356.1\|... gi\|169771217 - gi\|169771217\|ref\|XP_001820078.1\| hypothetical protein [Aspergillus oryzae RIB40]	149.0	[0..4]	[123..42]
gi\|66512023 - gi\|66512023\|ref\|XP_394667.2\| PREDICTED: similar to Nuclear transcription factor Y subunit beta (Nucl...	149.0	[0..4]	[122..68]
gi\|147901227, gi... - gi\|3170225\|gb\|AAC82336.1\| nuclear Y/CCAAT-box binding factor B subunit NF-YB [Xenopus laevis], gi\|14...	149.0	[0..4]	[101..52]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVERIEDLNL PNAVIGRLIK EALPESASVS KEARAAIARA ASVFAIFVTS SSTALAHKQN  60
   61 HKTITAKDIL QTLTELDFES FVPSLTQDLE VYRKVVKEKK ESKASKKDSN TAENANASAT 120
  121 ATAEEAPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.221849
Match:	2bykB
Description:	Histone fold heterodimer of the Chromatin Accessibility Complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.581886805340955	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: