YRC Public Data Repository - Protein Structure Prediction

Protein:	xl6-PA
Organism:	Drosophila melanogaster
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for xl6-PA.

Description	E-value	Query Range	Subject Range
gi\|73990618 - gi\|73990618\|ref\|XP_853786.1\| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP ...	130.0	[0..1]	[258..120]
gi\|49657746, gi\|... - gi\|50426951\|ref\|XP_462076.1\| hypothetical protein DEHA0G13255g [Debaryomyces hansenii CBS767], gi\|49... PABP_DEBHA - Polyadenylate-binding protein, cytoplasmic and nuclear - Debaryomyces hansenii (Yeast) (Torulaspora ...	129.0	[0..6]	[196..333]
gi\|157746851 - gi\|157746851\|ref\|XP_001668521.1\| Hypothetical protein CBG02207 [Caenorhabditis briggsae AF16] gi\|187037611, gi... - gi\|39580770\|emb\|CAE58939.1\| Hypothetical protein CBG02207 [Caenorhabditis briggsae], gi\|187037611\|em...	127.0	[0..6]	[209..315]
PABP_CANAL - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1 PABP_CANAL - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans (strain SC5314 / ATCC MYA... gi\|238879187 - gi\|238879187\|gb\|EEQ42825.1\| polyadenylate-binding protein [Candida albicans WO-1]	126.0	[0..6]	[203..334]
pab-1 - status:Partially_confirmed UniProt:Q7K798 protein_id:CAE54916.1	126.0	[0..6]	[209..252]
PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii (strain ATCC 10895 / CBS 1... PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1	126.0	[0..6]	[176..320]
pabp - mRNA export shuttling protein PABP_SCHPO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe (strain 972 / AT...	124.0	[0..1]	[214..358]
gi\|172092 - gi\|172092\|gb\|AAA34838.1\| polyadenylate-binding protein	124.0	[0..1]	[194..316]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRHPSDRKV YVGDLGNNAR KNDLEYVFGA YGSLRSVWIA RNPPGFAFVE FESARDAADA  60
   61 VRGLDGRTVC GRRARVELST GKYAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.221849
Match:	2i2yA
Description:	No description for 2i2yA was found.

Predicted Domain #2

Region A:
Residues: [86-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGGGGGGGGG GGGGGGLGGR DRGGGGRGDD KCYECGGRGH FARHCRERKA RQRRRSNSFS  60
   61 RSRSTSRRRR TRSKSGTRSR SRSAGSVGRR SGRSNGRDEN GSASRYSDHE RNGS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.39
Match:	2cqfA
Description:	Solution Structure of the Zinc-finger domain in LIN-28
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [200-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAVDSPPPPK RRYEDEDDDR VRGSPRSRSR SRSASPAVRR GSPPRRRGDS SASRSVSRD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits