YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9548-PA
Organism:	Drosophila melanogaster
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9548-PA.

Description	E-value	Query Range	Subject Range
gi\|25406958, gi\|... - gi\|8954029\|gb\|AAF82203.1\|AC067971_11 Identical to an unknown protein F23F1.8 gi\|7486045 from Arabido...	203.0	[0..1]	[104..1]
gi\|39794099 - gi\|39794099\|gb\|AAH63807.1\| Phf5a protein [Rattus norvegicus]	199.0	[0..1]	[110..1]
gi\|21711783 - gi\|21711783\|gb\|AAM75082.1\| RH02789p [Drosophila melanogaster]	195.0	[0..1]	[111..1]
gi\|115969413, gi... - gi\|72032358\|ref\|XP_799069.1\| PREDICTED: similar to conserved hypothetical protein [Strongylocentrotu...	193.0	[0..1]	[110..1]
gi\|167872294, gi... - gi\|170050839\|ref\|XP_001861492.1\| pre-mRNA-splicing factor ini1 [Culex quinquefasciatus], gi\|16787229... gi\|108880783, gi... - gi\|157137675\|ref\|XP_001657126.1\| hypothetical protein AaeL_AAEL003695 [Aedes aegypti], gi\|108880783\|...	192.0	[0..1]	[110..1]
gi\|21301692, gi\|... - gi\|31234226\|ref\|XP_319026.1\| AGAP009905-PA [Anopheles gambiae str. PEST], gi\|21301692\|gb\|EAA13837.1\|... AGAP009905-PA - PHD finger-like domain-containing protein 5A\|protein_coding\|3R:45185052:45185553:1\|gene:AGAP009905	192.0	[0..1]	[109..1]
gi\|91093335 - gi\|91093335\|ref\|XP_967031.1\| PREDICTED: similar to PHD-finger 5A [Tribolium castaneum]	192.0	[0..1]	[110..1]
gi\|54645620, gi\|... - gi\|54645620\|gb\|EAL34358.1\| GA21871-PA [Drosophila pseudoobscura], gi\|125987053\|ref\|XP_001357289.1\| G...	191.0	[0..1]	[109..1]
gi\|149743072 - gi\|149743072\|ref\|XP_001502540.1\| PREDICTED: similar to PHD-finger 5A [Equus caballus] PHF5A_MOUSE - PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1 gi\|57092723 - gi\|57092723\|ref\|XP_531718.1\| PREDICTED: similar to transcription factor INI [Canis familiaris] gi\|134085850, gi... - gi\|76617047\|ref\|XP_583749.2\| PREDICTED: similar to OTTHUMP00000028653 [Bos taurus], gi\|134085850\|ref... gi\|542160016\|ref... - PREDICTED: PHD finger-like domain-containing protein 5A [Zonotrichia albicollis] gi\|83406038, gi\|... - gi\|83406038\|gb\|AAI10790.1\| LOC496306 protein [Xenopus laevis], gi\|57032524\|gb\|AAH88823.1\| LOC496306 ... gi\|213512931, gi... - gi\|213512931\|ref\|NP_001135312.1\| PHD finger-like domain-containing protein 5A [Salmo salar], gi\|2097... PHF5A_RAT - PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1 gi\|28278016, gi\|... - gi\|68390528\|ref\|XP_698300.1\| PREDICTED: similar to transcription factor INI [Danio rerio], gi\|282780... tr\|M3W0S1\|M3W0S1... - PHD finger protein 5A OS=Felis catus GN=PHF5A PE=4 SV=1 gi\|194332809, gi... - gi\|194332809\|ref\|NP_001123712.1\| hypothetical protein LOC100170460 [Xenopus (Silurana) tropicalis], ... PHF5A - PHD finger protein 5A HGNC:18000\|Ensem... - finger protein 5A gi\|50728672 - gi\|50728672\|ref\|XP_416230.1\| PREDICTED: similar to OTTHUMP00000028653 [Gallus gallus] gi\|126343682 - gi\|126343682\|ref\|XP_001363497.1\| PREDICTED: similar to OTTHUMP00000028653 [Monodelphis domestica] gi\|114686627 - gi\|114686627\|ref\|XP_001169412.1\| PREDICTED: PHD-finger 5A [Pan troglodytes] gi\|109451052, gi... - gi\|224487745\|dbj\|BAH24107.1\| PHD finger protein 5A [synthetic construct], gi\|167773545\|gb\|ABZ92207.1... tr\|G1T3W6\|G1T3W6... - pep:novel scaffold:oryCun2:GL018734:993607:1002355:1 gene:ENSOCUG00000012705 transcript:ENSOCUT00000...	191.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHHPDLIF CRKQPGVAIG RLCEKDDGKC VICDSYVRPC TLVRICDECN YGSYQGRCVI  60
   61 CGGPGVSDAY YCKSCTIQEK DRDGCPKIVN LGSSKTDLFY ERKKYGFKQN Y

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	85.346787
Match:	PF03660.5
Description:	No description for PF03660.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.529	N/A	N/A	b.1.2	Fibronectin type III
View	Download	0.471	N/A	N/A	c.52.2	tRNA splicing endonuclease, C-terminal domain
View	Download	0.383	N/A	N/A	c.55.4	Translational machinery components
View	Download	0.380	N/A	N/A	b.1.2	Fibronectin type III
View	Download	0.368	N/A	N/A	d.229.1	Putative cell cycle protein MesJ, middle and C-terminal domain
View	Download	0.344	N/A	N/A	b.1.2	Fibronectin type III
View	Download	0.344	N/A	N/A	b.1.2	Fibronectin type III
View	Download	0.331	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.300	N/A	N/A	a.91.1	Regulator of G-protein signalling, RGS
View	Download	0.283	N/A	N/A	d.58.2	Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
View	Download	0.272	N/A	N/A	d.214.1	Hypothetical protein MTH1880
View	Download	0.221	N/A	N/A	d.93.1	SH2 domain
View	Download	0.208	N/A	N/A	d.93.1	SH2 domain
View	Download	0.203	N/A	N/A	d.360.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits