YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309827, CG9...
Organism:	Drosophila melanogaster
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309827, CG9....

Description	E-value	Query Range	Subject Range
gi\|16768410 - gi\|16768410\|gb\|AAL28424.1\| GM04011p [Drosophila melanogaster]	313.0	[0..1]	[223..1]
gi\|62661551, gi\|... - gi\|62661551\|ref\|XP_214202.3\| PREDICTED: similar to M142.8 [Rattus norvegicus], gi\|109502519\|ref\|XP_0...	294.0	[0..2]	[216..17]
N6AMT2 - N-6 adenine-specific DNA methyltransferase 2 (putative)	294.0	[0..2]	[216..7]
gi\|55639523, gi\|... - gi\|55639523\|ref\|XP_509564.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|1146489...	292.0	[0..2]	[216..7]
gi\|30705060, gi\|... - gi\|30705060\|gb\|AAH51925.1\| N-6 adenine-specific DNA methyltransferase 2 (putative) [Mus musculus], g...	291.0	[0..2]	[216..17]
gi\|109120146 - gi\|109120146\|ref\|XP_001085919.1\| PREDICTED: similar to M142.8 [Macaca mulatta]	290.0	[0..2]	[216..7]
gi\|57105038 - gi\|57105038\|ref\|XP_543173.1\| PREDICTED: similar to M142.8 [Canis familiaris]	280.0	[0..2]	[216..7]
N6MT2_CHICK - Protein-lysine N-methyltransferase N6AMT2 OS=Gallus gallus GN=N6AMT2 PE=2 SV=1	280.0	[0..4]	[216..8]
gi\|27803053 - gi\|27803053\|emb\|CAD60756.1\| unnamed protein product [Podospora anserina]	270.0	[0..2]	[219..7]

Back

Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDDISLPAD TLAILNEFLL ERSKREAEEE NQIANKTGKD AQFEEDWQLS QFWYSTETKH  60
   61 ALRDVVRKLL AERTEDSGDF SIALLSCPSL YKDIREIHDT VHIFEFDKRF EAYGTDFVHY 120
  121 DLNCVGSNPD YLKEHHQQYD LIVADPPFLS QECIAKTCEI ITRLQRNQKE SKVILCSGEV 180
  181 VEPWLTARLP VLKCSFRPEH ERNLGNKFVS YANFNLDEYI ENK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.977
Match:	1ws6A
Description:	The Structure of Thermus thermphillus HB8 hypothetical protein TTHA0928
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.16970557486814	bayes_pls_golite062009
transferase activity	0.822796502536128	bayes_pls_golite062009
transcription regulator activity	0.612864078793564	bayes_pls_golite062009
DNA binding	0.590883316793444	bayes_pls_golite062009
nucleic acid binding	0.495242738476094	bayes_pls_golite062009
binding	0.439311894979003	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.356820770014331	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.181009652174389	bayes_pls_golite062009
methyltransferase activity	0.165326524526999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: