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View Structure Prediction Details

Protein: Rtnl1-PA
Organism: Drosophila melanogaster
Length: 222 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Rtnl1-PA.

Description E-value Query
Range
Subject
Range
gi|56791762, gi|... - gi|56961618|ref|NP_989697.2| reticulon 4 [Gallus gallus], gi|56791762|gb|AAW30397.1| NOGO isoform A2...
268.0 [0..2] [213..855]
gi|109103031 - gi|109103031|ref|XP_001112090.1| PREDICTED: reticulon 4 [Macaca mulatta]
265.0 [0..12] [213..1135]
gi|40788974 - gi|40788974|dbj|BAA74909.2| KIAA0886 protein [Homo sapiens]
264.0 [0..12] [213..1032]
RTN4_MOUSE - Reticulon-4 OS=Mus musculus GN=Rtn4 PE=1 SV=2
262.0 [0..12] [213..961]

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Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGSKRYSR NNSNGNFQPL PERGPVESLI YWRDVKKSGI VFGAGLITLA AISSFSVISV  60
   61 FAYLSLLTLF GTVAFRIYKS VTQAVQKTNE GHPFKDYLEL DLTLSHEKVQ NIAGVAVAHI 120
  121 NGFISELRRL FLVEDIIDSI KF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 2g31A
Description: No description for 2g31A was found.

Predicted Domain #2
Region A:
Residues: [143-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVILWVFTYV GAWFNGMTLV ILAFVSLFTL PKVYENNKQS IDTHLDLVRS KLTEITDKIR  60
   61 VAIPIGNKKP EAAAESEKDK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle