YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0302939, CG1...
Organism:	Drosophila melanogaster
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0302939, CG1....

Description	E-value	Query Range	Subject Range
gi\|57164133, gi\|... - gi\|57164133\|ref\|NP_001009290.1\| NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 [Rattus nor...	176.0	[0..5]	[116..8]
NDUC2_MOUSE - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Mus musculus GN=Ndufc2 PE=1 SV=1	175.0	[0..5]	[116..8]
NDUC2_PANTR - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Pan troglodytes GN=NDUFC2 PE=3 SV=1	170.0	[0..6]	[116..8]
gi\|49065322, gi\|... - gi\|7513177\|pir\|\|T08728 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 14.1K chain - human, gi\|4906532... gi\|117644194 - gi\|117644194\|emb\|CAL37591.1\| hypothetical protein [synthetic construct]	170.0	[0..6]	[116..8]
NDUC2_MACFA - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Macaca fascicularis GN=NDUFC2 PE=3 SV=1	165.0	[0..6]	[116..8]
NDUC2_BOVIN - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Bos taurus GN=NDUFC2 PE=1 SV=1	164.0	[0..9]	[116..12]
gi\|57102342 - gi\|57102342\|ref\|XP_533999.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1, subcomplex unk...	158.0	[0..7]	[116..10]

Back

Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVNDPLEL LTNKGTHEPS FLSPIWNPIA CGVAGVGAAI FINWGFRKPV FSGIQKHIAF  60
   61 GAIGVGAGAY FDQKRNEYLA KRDAVLRHYI ELHPDDFPVK ERKTYGQVLE SWVPVR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.958607
Match:	PF06374.2
Description:	No description for PF06374.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.841	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits