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View Structure Prediction Details

Protein: FBpp0302939, CG1...
Organism: Drosophila melanogaster
Length: 116 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0302939, CG1....

Description E-value Query
Range
Subject
Range
gi|57164133, gi|... - gi|57164133|ref|NP_001009290.1| NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 [Rattus nor...
176.0 [0..5] [116..8]
NDUC2_MOUSE - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Mus musculus GN=Ndufc2 PE=1 SV=1
175.0 [0..5] [116..8]
NDUC2_PANTR - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Pan troglodytes GN=NDUFC2 PE=3 SV=1
170.0 [0..6] [116..8]
gi|49065322, gi|... - gi|7513177|pir||T08728 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 14.1K chain - human, gi|4906532...
gi|117644194 - gi|117644194|emb|CAL37591.1| hypothetical protein [synthetic construct]
170.0 [0..6] [116..8]
NDUC2_MACFA - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Macaca fascicularis GN=NDUFC2 PE=3 SV=1
165.0 [0..6] [116..8]
NDUC2_BOVIN - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Bos taurus GN=NDUFC2 PE=1 SV=1
164.0 [0..9] [116..12]
gi|57102342 - gi|57102342|ref|XP_533999.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1, subcomplex unk...
158.0 [0..7] [116..10]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVNDPLEL LTNKGTHEPS FLSPIWNPIA CGVAGVGAAI FINWGFRKPV FSGIQKHIAF  60
   61 GAIGVGAGAY FDQKRNEYLA KRDAVLRHYI ELHPDDFPVK ERKTYGQVLE SWVPVR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 5.958607
Match: PF06374.2
Description: No description for PF06374.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.841 N/A N/A a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.840 N/A N/A a.8.3 Families 57/38 glycoside transferase middle domain
View Download 0.700 N/A N/A a.7.6 Ribosomal protein S20
View Download 0.661 N/A N/A a.4.1 Homeodomain-like
View Download 0.649 N/A N/A a.7.6 Ribosomal protein S20


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