YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0307126, aph...
Organism:	Drosophila melanogaster
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0307126, aph....

Description	E-value	Query Range	Subject Range
gi\|110293151, gi... - gi\|34864291\|ref\|XP_217185.2\| PREDICTED: similar to APH1B homolog (C.elegans) [Rattus norvegicus], gi...	315.0	[0..1]	[238..1]
APH1C_MOUSE - Putative gamma-secretase subunit APH-1C OS=Mus musculus GN=Aph1c PE=2 SV=1	313.0	[0..1]	[238..1]
gi\|12654775 - gi\|12654775\|gb\|AAH01230.1\| Anterior pharynx defective 1 homolog A (C. elegans) [Homo sapiens]	300.0	[0..1]	[238..1]
gi\|55588124 - gi\|55588124\|ref\|XP_513772.1\| PREDICTED: anterior pharynx defective 1 homolog A isoform 5 [Pan troglo... APH1A - anterior pharynx defective 1 homolog A (C. elegans) gi\|109016025 - gi\|109016025\|ref\|XP_001100088.1\| PREDICTED: anterior pharynx defective 1 homolog A (C. elegans) isof...	299.0	[0..1]	[238..1]
gi\|194036283 - gi\|194036283\|ref\|XP_001924704.1\| PREDICTED: similar to anterior pharynx defective 1a homolog (C. ele... gi\|57098943 - gi\|57098943\|ref\|XP_540299.1\| PREDICTED: similar to Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alp...	298.0	[0..1]	[238..1]
APH1B_DANRE - Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1	296.0	[0..1]	[238..1]
gi\|67970371 - gi\|67970371\|dbj\|BAE01528.1\| unnamed protein product [Macaca fascicularis]	295.0	[0..1]	[238..1]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPEFFGCT FIAFGPPFAL FVFTIANDPV RIIILIAAAF FWLLSLLISS LWYALIPLKE  60
   61 FLAFGVVFSV CFQEAFRYII YRILRSTEQG LHAVAEDTRV TDNKHILAYV SGLGFGIISG 120
  121 MFALVNVLAD MSGPGTMGLK GGTELFFVTS AAQALSIILL HTFWSVIFFN AFDTNNYIHI 180
  181 GYVVFSHLFV SLITLLNANE LYTTTLLINY LVTILTGVLA FRVAGGTSRS FRKFITCQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits