YRC Public Data Repository - Protein Structure Prediction

Protein:	CG17652-PA, FBpp...
Organism:	Drosophila melanogaster
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG17652-PA, FBpp....

Description	E-value	Query Range	Subject Range
gi\|66770855 - gi\|66770855\|gb\|AAY54739.1\| IP08245p [Drosophila melanogaster]	258.0	[0..2]	[244..1]
UTP23 - UTP23, small subunit (SSU) processome component, homolog (yeast)	249.0	[0..1]	[219..1]
gi\|187282097, gi... - gi\|187282097\|ref\|NP_001119738.1\| UTP23, small subunit (SSU) processome component, homolog [Rattus no...	241.0	[0..1]	[219..1]
gi\|26335161 - gi\|26335161\|dbj\|BAC31281.1\| unnamed protein product [Mus musculus]	239.0	[0..1]	[219..1]
gi\|73974539 - gi\|73974539\|ref\|XP_539141.2\| PREDICTED: similar to CG17652-PA [Canis familiaris]	239.0	[0..1]	[219..1]
gi\|54645254, gi\|... - gi\|54645254\|gb\|EAL33994.1\| GA14597 [Drosophila pseudoobscura pseudoobscura], gi\|125986329\|ref\|XP_001... gi\|125986329\|ref... - GA14597-PA [Drosophila pseudoobscura], GA14597 [Drosophila pseudoobscura pseudoobscura]	238.0	[0..1]	[244..1]
UTP23_BOVIN - rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1	237.0	[0..1]	[219..1]
gi\|116123022, gi... - gi\|118789014\|ref\|XP_317138.3\| ENSANGP00000006696 [Anopheles gambiae str. PEST], gi\|116123022\|gb\|EAA1...	233.0	[0..1]	[237..1]
gi\|68485231, gi\|... - gi\|68485231\|ref\|XP_713449.1\| hypothetical protein CaO19.11208 [Candida albicans SC5314], gi\|46434940... orf19.11208 - orf19.3724 CGDID:CAL0001138 Assembly 19, Contig19-20190 (11851, 11042) CDS, reverse complemented, tr...	225.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISRFKKSH KTLVFFASNF DYREPYQVLI DATFCQAALQ QKIGIDEQIK KYFQCGVKLL  60
   61 TTQCVILESE SLGAPLTGAT SIVKRFHVHK CGHEGKPVPA SECIKSMTKD NRYVVASQDR 120
  121 LLQESLRKIP GRCLLYLHKA TPVLEAPSKA SKKWVQRRAK NLMLGKQVEK IDYMKEKQGL 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1o4wA
Description:	Hypothetical protein AF0591
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.35566910325969	bayes_pls_golite062009
catalytic activity	1.20318488753881	bayes_pls_golite062009
binding	0.580830628591659	bayes_pls_golite062009
nuclease activity	0.499094721194363	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.351108315345473	bayes_pls_golite062009
exonuclease activity	0.111351996464558	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [182-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAETAVKPKK HKGPKNPNPL SCKKSKKDKA KQQLKGVEQT AITKAKRKRV KIPAHVKAAL  60
   61 GKD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: