YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0305188, CG3...
Organism:	Drosophila melanogaster
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0305188, CG3....

Description	E-value	Query Range	Subject Range
gi\|125985951\|ref... - GA17579-PA [Drosophila pseudoobscura], GA17579 [Drosophila pseudoobscura pseudoobscura] gi\|125985951, gi... - gi\|54645064\|gb\|EAL33804.1\| GA17579 [Drosophila pseudoobscura pseudoobscura], gi\|125985951\|ref\|XP_001...	199.0	[0..1]	[297..1]
PEX12_MOUSE - Peroxisome assembly protein 12 OS=Mus musculus GN=Pex12 PE=1 SV=1	179.0	[0..1]	[295..1]
gi\|57091801 - gi\|57091801\|ref\|XP_548259.1\| PREDICTED: similar to Peroxisome assembly protein 12 (Peroxin-12) (Pero...	179.0	[0..1]	[295..1]
PEX12_RAT - Peroxisome assembly protein 12 OS=Rattus norvegicus GN=Pex12 PE=2 SV=1	178.0	[0..1]	[295..1]
PEX12_CRILO - Peroxisome assembly protein 12 OS=Cricetulus longicaudatus GN=PEX12 PE=2 SV=1 tr\|G3I8C0\|G3I8C0... - Peroxisome assembly protein 12 OS=Cricetulus griseus GN=I79_019783 PE=3 SV=1	176.0	[0..1]	[295..1]
PEX12 - peroxisomal biogenesis factor 12 gi\|123994893 - gi\|123994893\|gb\|ABM85048.1\| peroxisomal biogenesis factor 12 [synthetic construct]	174.0	[0..1]	[295..1]
gi\|114668062, gi... - gi\|114668064\|ref\|XP_523610.2\| PREDICTED: peroxisomal biogenesis factor 12 isoform 2 [Pan troglodytes...	174.0	[0..1]	[295..1]
gi\|37932543 - gi\|37932543\|gb\|AAP76411.1\| RAG1 protein [Glaucomys volans]	173.0	[0..44]	[291..52]
gi\|37932557 - gi\|37932557\|gb\|AAP76418.1\| RAG1 protein [Callosciurus erythraeus]	173.0	[0..44]	[291..52]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAANVRQN LQNVPSIFEI SASETLDNLI YPALSKIFDY FGLRLDFKLW GSLRIQEELS  60
   61 PLLTWLLQYL YLRKRASSFG ESFYGLQRTV TTTGDLLNRR QQFASATLLT FMPYVERKLR 120
  121 TRITRHEDTS PWEQRLLSAF HAFHAAKAAH TFFYLVKYAS NHSPIFRLLG LTLRYPSEPP 180
  181 KEDQWTYVVL KMLEVLAFFL QFVQWWYSND QRRK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.309804
Match:	PF04757.5
Description:	No description for PF04757.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [215-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGGTLINPEA MPRKQLPKEV QQSLPQRGEC PVCLLSIQTP TACSVSGYVF CWKCIVSHMK  60
   61 EHGTCPVTHY PISLDDLVRI YET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.69897
Match:	2f42A
Description:	No description for 2f42A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits