YRC Public Data Repository - Protein Structure Prediction

Protein:	U2af38-PA, FBpp0...
Organism:	Drosophila melanogaster
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for U2af38-PA, FBpp0....

Description	E-value	Query Range	Subject Range
gi\|114684595 - gi\|114684595\|ref\|XP_001137466.1\| PREDICTED: hypothetical protein [Pan troglodytes]	171.0	[0..1]	[188..438]
gi\|109065222 - gi\|109065222\|ref\|XP_001118538.1\| PREDICTED: similar to Splicing factor U2AF 35 kDa subunit (U2 auxil...	167.0	[0..1]	[188..211]
gi\|21105405, gi\|... - gi\|29126228\|ref\|NP_803432.1\| U2(RNU2) small nuclear RNA auxiliary factor 1 [Danio rerio], gi\|2110540...	165.0	[0..1]	[189..1]
gi\|4204470 - gi\|4204470\|gb\|AAD13394.1\| splicing factor U2AF35 [Takifugu rubripes]	164.0	[0..1]	[193..1]
gi\|47226948 - gi\|47226948\|emb\|CAG05840.1\| unnamed protein product [Tetraodon nigroviridis]	164.0	[0..1]	[193..1]
gi\|80477616, gi\|... - gi\|80477616\|gb\|AAI08559.1\| MGC131026 protein [Xenopus laevis], gi\|148223762\|ref\|NP_001089860.1\| hypo...	163.0	[0..1]	[188..1]
gi\|113931334, gi... - gi\|89268927\|emb\|CAJ81820.1\| U2(RNU2) small nuclear RNA auxiliary factor 1 [Xenopus tropicalis], gi\|1...	162.0	[0..1]	[188..1]
gi\|119629907, gi... - gi\|68800128\|ref\|NP_001020374.1\| U2 small nuclear RNA auxillary factor 1 isoform b [Homo sapiens], gi... ENSPTRT00000007520 - null ENSMMUT000000033... - null, null	162.0	[0..1]	[188..1]
gi\|197127861, gi... - gi\|224042573\|ref\|XP_002188907.1\| PREDICTED: U2 small nuclear RNA auxillary factor 1 [Taeniopygia gut... gi\|76656229 - gi\|76656229\|ref\|XP_880597.1\| PREDICTED: similar to U2 small nuclear RNA auxillary factor 1 isoform b...	162.0	[0..1]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEYLASIFG TEKDKVNCSF YFKIGACRHG DRCSRIHNKP TFSQTVLLQN LYVNPQNSAK  60
   61 SADGSHLVAN VSDEEMQEHY DNFFEDVFVE CEDKYGEIEE MNVCDNLGDH LVGNVYIKFR 120
  121 NEADAEKAAN DLNNRWFGGR PVYSELSPVT DFREACCRQY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	1jmtA
Description:	U2AF35 (35 KDa subunit)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.950788308762215	bayes_pls_golite062009
nucleic acid binding	0.29562225149076	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [161-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMGECTRSGF CNFMHLKPIS RELRRYLYSR RRRARSRSRS PGRRRGSRSR SRSPGRRGGG  60
   61 RGDGVGGGNY LNNERDNMRG NDRGNDRDRR KGGGGGGGGG GGRY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: