YRC Public Data Repository - Protein Structure Prediction

Protein:	CG3436-PB
Organism:	Drosophila melanogaster
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG3436-PB.

Description	E-value	Query Range	Subject Range
gi\|49125072, gi\|... - gi\|67903036\|ref\|XP_681774.1\| hypothetical protein AN8505.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	119.0	[0..1]	[79..669]
gi\|116191741, gi... - gi\|88181501\|gb\|EAQ88969.1\| hypothetical protein CHGG_05588 [Chaetomium globosum CBS 148.51], gi\|1161...	114.0	[0..1]	[79..744]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	112.0	[0..1]	[79..532]
gi\|66846395, gi\|... - gi\|70986548\|ref\|XP_748765.1\| NACHT and WD40 domain protein [Aspergillus fumigatus Af293], gi\|6684639...	112.0	[0..2]	[79..907]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	112.0	[0..2]	[79..1277]
gi\|75704776, gi\|... - gi\|75911051\|ref\|YP_325347.1\| WD-40 repeat-containing serine/threonin protein kinase [Anabaena variab...	111.0	[0..3]	[79..385]
gi\|72160460, gi\|... - gi\|72160460\|ref\|YP_288117.1\| WD-40 repeat-containing tyrosine protein kinase [Thermobifida fusca YX]... PKWA_THECU - Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1	111.0	[0..2]	[79..661]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	111.0	[0..1]	[79..682]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	111.0	[0..1]	[79..1500]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	111.0	[0..2]	[79..898]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTKRPNNSV ILAQEAKRSK NDLMAYTNRD KALLESGVRR TSNLQAPIMQ LEGHEGEIFT  60
   61 AEFHPEGELL LSSGFDRQIC E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits