YRC Public Data Repository - Protein Structure Prediction

Protein:	GFRP_RAT
Organism:	Rattus norvegicus
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GFRP_RAT.

Description	E-value	Query Range	Subject Range
gi\|109080777 - gi\|109080777\|ref\|XP_001097382.1\| PREDICTED: similar to GTP cyclohydrolase I feedback regulator [Maca...	178.0	[0..1]	[84..188]
GFRP_MOUSE - GTP cyclohydrolase 1 feedback regulatory protein OS=Mus musculus GN=Gchfr PE=1 SV=3	174.0	[0..1]	[84..1]
gi\|50747626 - gi\|50747626\|ref\|XP_420935.1\| PREDICTED: similar to RIKEN cDNA 2010323F13 gene [Gallus gallus]	173.0	[0..1]	[84..63]
GFRP_RAT - (P70552) GTP cyclohydrolase 1 feedback regulatory protein (GTP cyclohydrolase I feedback regulatory ...	172.0	[0..2]	[84..1]
GFRP_BOVIN - GTP cyclohydrolase 1 feedback regulatory protein OS=Bos taurus GN=GCHFR PE=3 SV=1	172.0	[0..1]	[84..1]
gi\|62898421 - gi\|62898421\|dbj\|BAD97150.1\| GTP cyclohydrolase I feedback regulatory protein variant [Homo sapiens]	171.0	[0..1]	[84..1]
gi\|74000128 - gi\|74000128\|ref\|XP_544622.2\| PREDICTED: similar to GTP cyclohydrolase I feedback regulator [Canis fa...	170.0	[0..1]	[84..1]
GFRP_DANRE - GTP cyclohydrolase 1 feedback regulatory protein OS=Danio rerio GN=gchfr PE=3 SV=1	164.0	[0..1]	[84..1]
gi\|47230275 - gi\|47230275\|emb\|CAG10689.1\| unnamed protein product [Tetraodon nigroviridis]	161.0	[0..1]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYLLISTQI RMEVGPTMVG DEHSDPELMQ QLGASKRRVL GNNFYEYYVN DPPRIVLDKL  60
   61 ECRGFRVLSM TGVGQTLVWC LHKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.09691
Match:	1is7K
Description:	GTP cyclohydrolase I feedback regulatory protein, GFRP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits